Package ubic.gemma.apps
Class MakeExperimentPrivateCli
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- All Implemented Interfaces:
org.springframework.beans.factory.Aware
,org.springframework.beans.factory.InitializingBean
,org.springframework.context.ApplicationContextAware
,org.springframework.context.EnvironmentAware
,CLI
public class MakeExperimentPrivateCli extends ExpressionExperimentManipulatingCLI
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Nested Class Summary
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Nested classes/interfaces inherited from interface ubic.gemma.cli.util.CLI
CLI.CommandGroup
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Field Summary
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Fields inherited from class ubic.gemma.apps.ExpressionExperimentManipulatingCLI
auditEventService, auditTrailService, eeService, entityLocator, entityUrlBuilder
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Fields inherited from class ubic.gemma.cli.util.AbstractAutoSeekingCLI
FORCE_OPTION
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Fields inherited from class ubic.gemma.cli.util.AbstractCLI
ABORTED, FAILURE, FAILURE_FROM_ERROR_OBJECTS, log, SUCCESS
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Constructor Summary
Constructors Constructor Description MakeExperimentPrivateCli()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getCommandName()
A short memorable name for the command that can be used to locate this class.String
getShortDesc()
Obtain a short description for this command explaining what it does.protected void
processBioAssaySet(BioAssaySet ee)
Process a BioAssaySet.-
Methods inherited from class ubic.gemma.apps.ExpressionExperimentManipulatingCLI
addSingleExperimentOption, addSingleExperimentOption, buildExperimentOptions, buildOptions, doAuthenticatedWork, formatExperiment, getCommandGroup, isAbortOnError, noNeedToRun, preprocessBioAssaySets, processBioAssaySets, processExperimentOptions, processExpressionExperiment, processExpressionExperimentSubSet, processOptions, processOtherBioAssaySet, readChangelogEntryFromConsole, refreshExpressionExperimentFromGemmaWeb, setAbortOnError, setDefaultToAll, setSingleExperimentMode, setUseReferencesIfPossible, toBatchObject, toBatchObject
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Methods inherited from class ubic.gemma.cli.util.AbstractAutoSeekingCLI
addAutoOption, addAutoOption, addErrorObject, addErrorObject, addErrorObject, addForceOption, addForceOption, addLimitingDateOption, addSuccessObject, addSuccessObject, addWarningObject, addWarningObject, getAutoSeekEventType, getLimitingDate, isAutoSeek, isForce, setForce
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Methods inherited from class ubic.gemma.cli.util.AbstractAuthenticatedCLI
afterPropertiesSet, createBatchTaskExecutorService, doWork, setEnvironment, setRequireLogin
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Methods inherited from class ubic.gemma.cli.util.AbstractCLI
abort, addBatchOption, addErrorObject, addErrorObject, addErrorObject, addSuccessObject, addSuccessObject, addThreadsOption, addWarningObject, addWarningObject, allowPositionalArguments, awaitBatchExecutorService, executeCommand, getApplicationContext, getBatchTaskExecutor, getCliContext, getCommandAliases, getHelpFooter, getNumThreads, getOptions, getUsage, promptConfirmationOrAbort, setAllowPositionalArguments, setApplicationContext, setEstimatedMaxTasks, setReportFrequencyMillis
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Method Detail
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getCommandName
public String getCommandName()
Description copied from interface:CLI
A short memorable name for the command that can be used to locate this class.- Specified by:
getCommandName
in interfaceCLI
- Overrides:
getCommandName
in classAbstractCLI
- Returns:
- name; if null or blank, this will not be available as a shortcut command.
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getShortDesc
public String getShortDesc()
Description copied from interface:CLI
Obtain a short description for this command explaining what it does.- Specified by:
getShortDesc
in interfaceCLI
- Overrides:
getShortDesc
in classAbstractCLI
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processBioAssaySet
protected void processBioAssaySet(BioAssaySet ee)
Description copied from class:ExpressionExperimentManipulatingCLI
Process a BioAssaySet.This method delegates to one of
ExpressionExperimentManipulatingCLI.processExpressionExperiment(ExpressionExperiment)
,ExpressionExperimentManipulatingCLI.processExpressionExperimentSubSet(ExpressionExperimentSubSet)
orExpressionExperimentManipulatingCLI.processOtherBioAssaySet(BioAssaySet)
.- Overrides:
processBioAssaySet
in classExpressionExperimentManipulatingCLI
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