Uses of Class
ubic.gemma.core.analysis.expression.coexpression.CoexpressionMetaValueObject

Packages that use CoexpressionMetaValueObject

Package	Description
ubic.gemma.core.analysis.expression.coexpression
ubic.gemma.web.controller.analysis.expression.coexpression

Uses of CoexpressionMetaValueObject in ubic.gemma.core.analysis.expression.coexpression

Methods in ubic.gemma.core.analysis.expression.coexpression that return CoexpressionMetaValueObject

Modifier and Type	Method	Description
CoexpressionMetaValueObject	GeneCoexpressionSearchService.coexpressionSearch(Collection<Long> inputEeIds, Collection<Long> genes, int stringency, int maxResults, boolean queryGenesOnly)
CoexpressionMetaValueObject	GeneCoexpressionSearchServiceImpl.coexpressionSearch(Collection<Long> inputEeIds, Collection<Long> genes, int stringency, int maxResults, boolean queryGenesOnly)
CoexpressionMetaValueObject	GeneCoexpressionSearchService.coexpressionSearchQuick(Collection<Long> inputEeIds, Collection<Long> genes, int stringency, int maxResults, boolean queryGenesOnly)	Skips some of the postprocessing steps, use in situations where raw speed is more important than details.
CoexpressionMetaValueObject	GeneCoexpressionSearchServiceImpl.coexpressionSearchQuick(Collection<Long> eeIds, Collection<Long> queryGenes, int stringency, int maxResults, boolean queryGenesOnly)

Uses of CoexpressionMetaValueObject in ubic.gemma.web.controller.analysis.expression.coexpression

Methods in ubic.gemma.web.controller.analysis.expression.coexpression that return CoexpressionMetaValueObject

Modifier and Type	Method	Description
CoexpressionMetaValueObject	CoexpressionSearchController.doSearch(CoexpressionSearchCommand searchOptions)	Important entry point - called by the CoexpressionSearchTask
CoexpressionMetaValueObject	CoexpressionSearchController.doSearchQuickComplete(CoexpressionSearchCommand searchOptions, Collection<Long> queryGeneIds)	Do a search that fills in the edges among the genes already found.