Uses of Class
ubic.gemma.core.analysis.expression.coexpression.links.LinkAnalysis

Packages that use LinkAnalysis

Package	Description
ubic.gemma.core.analysis.expression.coexpression.links

Uses of LinkAnalysis in ubic.gemma.core.analysis.expression.coexpression.links

Methods in ubic.gemma.core.analysis.expression.coexpression.links that return LinkAnalysis

Modifier and Type	Method	Description
LinkAnalysis	LinkAnalysisService.process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)	Run a link analysis on an experiment, and persist the results if the configuration says to.
LinkAnalysis	LinkAnalysisServiceImpl.process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
LinkAnalysis	LinkAnalysisService.processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)	Used when the input is data vectors from another source, instead of from a DB-bound expressionExperiment.
LinkAnalysis	LinkAnalysisServiceImpl.processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)

Methods in ubic.gemma.core.analysis.expression.coexpression.links with parameters of type LinkAnalysis

Modifier and Type	Method	Description
void	LinkAnalysisPersister.saveLinksToDb(LinkAnalysis la)	Persist links to the database.
void	LinkAnalysisPersisterImpl.saveLinksToDb(LinkAnalysis la)