Uses of Class
ubic.gemma.core.analysis.expression.coexpression.links.LinkAnalysis
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Packages that use LinkAnalysis Package Description ubic.gemma.core.analysis.expression.coexpression.links -
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Uses of LinkAnalysis in ubic.gemma.core.analysis.expression.coexpression.links
Methods in ubic.gemma.core.analysis.expression.coexpression.links that return LinkAnalysis Modifier and Type Method Description LinkAnalysis
LinkAnalysisService. process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
Run a link analysis on an experiment, and persist the results if the configuration says to.LinkAnalysis
LinkAnalysisServiceImpl. process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
LinkAnalysis
LinkAnalysisService. processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
Used when the input is data vectors from another source, instead of from a DB-bound expressionExperiment.LinkAnalysis
LinkAnalysisServiceImpl. processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
Methods in ubic.gemma.core.analysis.expression.coexpression.links with parameters of type LinkAnalysis Modifier and Type Method Description void
LinkAnalysisPersister. saveLinksToDb(LinkAnalysis la)
Persist links to the database.void
LinkAnalysisPersisterImpl. saveLinksToDb(LinkAnalysis la)
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