Uses of Class
ubic.gemma.core.analysis.expression.coexpression.links.LinkAnalysisConfig

Packages that use LinkAnalysisConfig

Package	Description
ubic.gemma.core.analysis.expression.coexpression.links
ubic.gemma.core.tasks.analysis.coexp

Uses of LinkAnalysisConfig in ubic.gemma.core.analysis.expression.coexpression.links

Methods in ubic.gemma.core.analysis.expression.coexpression.links that return LinkAnalysisConfig

Modifier and Type	Method	Description
LinkAnalysisConfig	LinkAnalysis.getConfig()

Methods in ubic.gemma.core.analysis.expression.coexpression.links with parameters of type LinkAnalysisConfig

Modifier and Type	Method	Description
LinkAnalysis	LinkAnalysisService.process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)	Run a link analysis on an experiment, and persist the results if the configuration says to.
LinkAnalysis	LinkAnalysisServiceImpl.process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
LinkAnalysis	LinkAnalysisService.processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)	Used when the input is data vectors from another source, instead of from a DB-bound expressionExperiment.
LinkAnalysis	LinkAnalysisServiceImpl.processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)

Constructors in ubic.gemma.core.analysis.expression.coexpression.links with parameters of type LinkAnalysisConfig

Modifier	Constructor	Description
	LinkAnalysis(LinkAnalysisConfig config)

Uses of LinkAnalysisConfig in ubic.gemma.core.tasks.analysis.coexp

Methods in ubic.gemma.core.tasks.analysis.coexp that return LinkAnalysisConfig

Modifier and Type	Method	Description
LinkAnalysisConfig	LinkAnalysisTaskCommand.getLinkAnalysisConfig()

Constructors in ubic.gemma.core.tasks.analysis.coexp with parameters of type LinkAnalysisConfig

Modifier	Constructor	Description
	LinkAnalysisTaskCommand(ExpressionExperiment ee, LinkAnalysisConfig lac, FilterConfig fg)