Package ubic.gemma.core.analysis.preprocess.batcheffects

Class AffyScanDateExtractor

java.lang.Object

ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor

ubic.gemma.core.analysis.preprocess.batcheffects.AffyScanDateExtractor

All Implemented Interfaces:

ScanDateExtractor

public class AffyScanDateExtractor
extends BaseScanDateExtractor

Extract the scan date from Affymetrix CEL files. Handles both version 3 (ASCII) and 4 (binary) files.

See CEL and GENERIC

Note that the Affymetrix documentation does not mention a date, explicitly, but it's in the "DatHeader"

Author:

paul

Field Summary

Fields inherited from class ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor

GENEPIX_DATETIME_HEADER_REGEXP

Constructor Summary

Constructors

Constructor	Description
AffyScanDateExtractor()

Method Summary

Modifier and Type	Method	Description
Date	extract(InputStream is)
Date	parseGenericCCHeader(DataInputStream str)

Methods inherited from class ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor

extractGenePix, parseGenePixDateTime, parseISO8601, parseLongFormat, parseStandardFormat

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AffyScanDateExtractor

public AffyScanDateExtractor()

Method Details

extract

public Date extract(InputStream is)

parseGenericCCHeader

public Date parseGenericCCHeader(DataInputStream str)
                          throws IOException

Throws:

IOException