Hierarchy For Package ubic.gemma.core.analysis.preprocess.batcheffects

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • ubic.gemma.core.analysis.preprocess.batcheffects.BaseScanDateExtractor (implements ubic.gemma.core.analysis.preprocess.batcheffects.ScanDateExtractor)
    • ubic.gemma.core.analysis.preprocess.batcheffects.AffyScanDateExtractor
    • ubic.gemma.core.analysis.preprocess.batcheffects.AgilentScanDateExtractor
    • ubic.gemma.core.analysis.preprocess.batcheffects.GenericScanFileDateExtractor
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchConfound (implements java.io.Serializable)
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchConfoundUtils
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchEffectDetails
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchEffectDetails.BatchEffectStatistics
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoParser
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationHelperServiceImpl (implements ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationHelperService)
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationServiceImpl (implements ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationService)
  • ubic.gemma.core.analysis.preprocess.batcheffects.ComBat<R,C>
  • ubic.gemma.core.analysis.preprocess.batcheffects.ExpressionExperimentBatchCorrectionServiceImpl (implements ubic.gemma.core.analysis.preprocess.batcheffects.ExpressionExperimentBatchCorrectionService)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • ubic.gemma.core.analysis.preprocess.PreprocessingException
          • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationException
            • ubic.gemma.core.analysis.preprocess.batcheffects.FASTQHeadersPresentButNotUsableException
            • ubic.gemma.core.analysis.preprocess.batcheffects.SingletonBatchesException
            • ubic.gemma.core.analysis.preprocess.batcheffects.UnsupportedRawdataFileFormatException

Interface Hierarchy

• ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationHelperService
• ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationService
• ubic.gemma.core.analysis.preprocess.batcheffects.ExpressionExperimentBatchCorrectionService
• ubic.gemma.core.analysis.preprocess.batcheffects.ScanDateExtractor