Interface BatchInfoPopulationHelperService
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- All Known Implementing Classes:
BatchInfoPopulationHelperServiceImpl
public interface BatchInfoPopulationHelperService
- Author:
- paul
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description ExperimentalFactor
createBatchFactor(ExpressionExperiment ee, Map<BioMaterial,Date> dates)
ExperimentalFactor
createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial,String> headers)
For RNA-seq, we based the batching on the available device/run/flowcell/lane information
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Method Detail
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createRnaSeqBatchFactor
ExperimentalFactor createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial,String> headers)
For RNA-seq, we based the batching on the available device/run/flowcell/lane information- Parameters:
ee
- experimentheaders
- map of biomaterial to a string. If there was no usable FASTQ header, we just use the GPL ID- Returns:
- factor
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createBatchFactor
ExperimentalFactor createBatchFactor(ExpressionExperiment ee, Map<BioMaterial,Date> dates)
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