Interface BatchInfoPopulationHelperService
- All Known Implementing Classes:
BatchInfoPopulationHelperServiceImpl
public interface BatchInfoPopulationHelperService
- Author:
- paul
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Method Summary
Modifier and TypeMethodDescriptioncreateBatchFactor(ExpressionExperiment ee, Map<BioMaterial, Date> dates) createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial, String> headers) For RNA-seq, we based the batching on the available device/run/flowcell/lane information
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Method Details
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createRnaSeqBatchFactor
ExperimentalFactor createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial, String> headers) For RNA-seq, we based the batching on the available device/run/flowcell/lane information- Parameters:
ee- experimentheaders- map of biomaterial to a string. If there was no usable FASTQ header, we just use the GPL ID- Returns:
- factor
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createBatchFactor
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