Class BatchInfoPopulationHelperServiceImpl
- java.lang.Object
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- ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationHelperServiceImpl
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- All Implemented Interfaces:
BatchInfoPopulationHelperService
@Service public class BatchInfoPopulationHelperServiceImpl extends Object implements BatchInfoPopulationHelperService
- Author:
- paul
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Constructor Summary
Constructors Constructor Description BatchInfoPopulationHelperServiceImpl()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description ExperimentalFactor
createBatchFactor(ExpressionExperiment ee, Map<BioMaterial,Date> dates)
ExperimentalFactor
createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial,String> headers)
For RNA-seq, we based the batching on the available device/run/flowcell/lane information
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Method Detail
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createRnaSeqBatchFactor
@Transactional public ExperimentalFactor createRnaSeqBatchFactor(ExpressionExperiment ee, Map<BioMaterial,String> headers)
Description copied from interface:BatchInfoPopulationHelperService
For RNA-seq, we based the batching on the available device/run/flowcell/lane information- Specified by:
createRnaSeqBatchFactor
in interfaceBatchInfoPopulationHelperService
- Parameters:
ee
- experimentheaders
- map of biomaterial to a string. If there was no usable FASTQ header, we just use the GPL ID- Returns:
- factor
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createBatchFactor
@Transactional public ExperimentalFactor createBatchFactor(ExpressionExperiment ee, Map<BioMaterial,Date> dates)
- Specified by:
createBatchFactor
in interfaceBatchInfoPopulationHelperService
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