Package ubic.gemma.core.analysis.preprocess.batcheffects

Class BatchConfound

java.lang.Object

ubic.gemma.core.analysis.preprocess.batcheffects.BatchConfound

public final class BatchConfound
extends Object

Represents a summary of a batch effect confound.

Author:

paul

Constructor Summary

Constructors

Constructor	Description
BatchConfound(BioAssaySet bioAssaySet, ExperimentalFactor factor, double chiSquare, int df, double pValue, int numBatches)	Creates a new BatchConfound instance.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
BioAssaySet	getBioAssaySet()	Experiment or subset this confound is applicable to.
double	getChiSquare()
int	getDf()
ExperimentalFactor	getFactor()	Factor being confounded with the batches.
int	getNumBatches()	Number of batches.
double	getPValue()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

BatchConfound

public BatchConfound(BioAssaySet bioAssaySet,
 ExperimentalFactor factor,
 double chiSquare,
 int df,
 double pValue,
 int numBatches)

Creates a new BatchConfound instance.

Parameters:

bioAssaySet - Experiment or subset this confound is applicable to.

factor - Factor being confounded with the batches.

chiSquare -

df -

pValue -

numBatches - Number of batches.

Method Details

toString

public String toString()

Overrides:

toString in class Object

getBioAssaySet

public BioAssaySet getBioAssaySet()

Experiment or subset this confound is applicable to.

getFactor

public ExperimentalFactor getFactor()

Factor being confounded with the batches.

getChiSquare

public double getChiSquare()

getDf

public int getDf()

getPValue

public double getPValue()

getNumBatches

public int getNumBatches()

Number of batches.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object