Uses of Class
ubic.gemma.core.analysis.preprocess.batcheffects.BatchConfound

Packages that use BatchConfound

Package	Description
ubic.gemma.core.analysis.preprocess.batcheffects
ubic.gemma.rest

Uses of BatchConfound in ubic.gemma.core.analysis.preprocess.batcheffects

Methods in ubic.gemma.core.analysis.preprocess.batcheffects that return types with arguments of type BatchConfound

Modifier and Type	Method	Description
List<BatchConfound>	ExpressionExperimentBatchInformationService.getSignificantBatchConfounds(ExpressionExperiment ee)	Obtain the significant batch confounds for a dataset.
List<BatchConfound>	ExpressionExperimentBatchInformationServiceImpl.getSignificantBatchConfounds(ExpressionExperiment ee)
Map<ExpressionExperimentSubSet,List<BatchConfound>>	ExpressionExperimentBatchInformationService.getSignificantBatchConfoundsForSubsets(ExpressionExperiment ee)	Obtain the significant batch confounds for a dataset subsets.
Map<ExpressionExperimentSubSet,List<BatchConfound>>	ExpressionExperimentBatchInformationServiceImpl.getSignificantBatchConfoundsForSubsets(ExpressionExperiment ee)
static Collection<BatchConfound>	BatchConfoundUtils.test(BioAssaySet ee)

Uses of BatchConfound in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type BatchConfound

Modifier	Constructor	Description
	BatchConfoundValueObject(BatchConfound batchConfound)

Constructor parameters in ubic.gemma.rest with type arguments of type BatchConfound

Modifier	Constructor	Description
	BatchInformationValueObject(BatchEffectType batchEffectType, BatchEffectDetails batchEffectDetails, List<BatchConfound> batchConfound, Map<ExpressionExperimentSubSet,List<BatchConfound>> subsetBatchConfounds)
	BatchInformationValueObject(BatchEffectType batchEffectType, BatchEffectDetails batchEffectDetails, List<BatchConfound> batchConfound, Map<ExpressionExperimentSubSet,List<BatchConfound>> subsetBatchConfounds)