Package ubic.gemma.rest

package ubic.gemma.rest

Related Packages

Package	Description
ubic.gemma.rest.analytics
ubic.gemma.rest.annotations
ubic.gemma.rest.providers
ubic.gemma.rest.security
ubic.gemma.rest.serializers
ubic.gemma.rest.servlet
ubic.gemma.rest.util

Class	Description
AnalysisResultSetsWebService	Endpoint for AnalysisResultSet
AnalysisResultSetsWebService.PaginatedResultsResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject	Similar to PaginatedResponseDataObject, but the data.results is paginated instead of data
AnnotationsWebService	RESTful interface for annotations.
AnnotationsWebService.AnnotationSearchResultValueObject
AnnotationsWebService.OntologyTermSimpleValueObject
AnnotationsWebService.OntologyTermValueObject
DatasetsWebService	RESTful interface for datasets.
DatasetsWebService.AnnotationWithUsageStatisticsValueObject	This is an aggregated entity across value URI and value, thus the id and objectClass are omitted.
DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject
DatasetsWebService.BatchConfoundValueObject
DatasetsWebService.BatchEffectStatisticsValueObject
DatasetsWebService.BatchInformationValueObject
DatasetsWebService.CategoryWithUsageStatisticsValueObject
DatasetsWebService.CurationDetailsUpdateRequest	Request body for DatasetsWebService.updateDatasetCurationDetails(ubic.gemma.rest.util.args.DatasetArg<?>, ubic.gemma.rest.DatasetsWebService.CurationDetailsUpdateRequest).
DatasetsWebService.DatasetPermissionsValueObject	Lightweight view of a dataset's sharing state, returned by the permissions endpoint.
DatasetsWebService.DifferentialAnalysisRunRequest	Optional request body for DatasetsWebService.runDatasetDifferentialAnalysis(ubic.gemma.rest.util.args.DatasetArg<?>, ubic.gemma.rest.DatasetsWebService.DifferentialAnalysisRunRequest).
DatasetsWebService.DifferentialExpressionAnalysisResultByGeneValueObject
DatasetsWebService.ExpressionExperimentSubSetGroupValueObject	A group of subsets, logically organized by a BioAssayDimension.
DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject
DatasetsWebService.ExpressionExperimentSubSetWithGroupsValueObject
DatasetsWebService.ExpressionExperimentWithSearchResultValueObject
DatasetsWebService.FilteredAndInferredAndPaginatedResponseDataObject<T>
DatasetsWebService.OntologyTermValueObject
DatasetsWebService.PermissionsUpdateRequest	Request body for DatasetsWebService.updateDatasetPermissions(ubic.gemma.rest.util.args.DatasetArg<?>, ubic.gemma.rest.DatasetsWebService.PermissionsUpdateRequest).
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<T>
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<T>
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject
DatasetsWebService.QueriedAndFilteredAndInferredResponseDataObject<T>
DatasetsWebService.ResponseDataObjectCellTypeAssignmentValueObject
DatasetsWebService.ResponseDataObjectExpressionExperimentValueObject
DatasetsWebService.ResponseDataObjectListCellLevelCharacteristicsValueObject
DatasetsWebService.ResponseDataObjectSingleCellDimensionValueObject
DatasetsWebService.SimpleSVDValueObject
DatasetsWebService.TaxonWithUsageStatisticsValueObject
DatasetsWebService.UsageStatistics
GeneWebService	RESTful interface for genes.
PipelineStatusValueObject	Snapshot of every preprocessing/analysis pipeline step for a single experiment.
PipelineStatusValueObject.PipelineStepValueObject
PlatformsWebService	RESTful interface for platforms.
RootWebService	Handles calls to the root API url and user info api
RootWebService.ApiInfoValueObject
RootWebService.UserValueObject
SearchWebService	Provides search capabilities to the RESTful API.
SearchWebService.SearchResultsResponseDataObject
SearchWebService.SearchResultValueObject<T extends IdentifiableValueObject<?>>	Representation of SearchResult for the RESTful API.
TaskStatusValueObject	Snapshot of a SubmittedTask for the REST API.
TasksWebService	RESTful interface for polling background pipeline tasks submitted via the dispatch endpoints on DatasetsWebService (preprocess, diagnostics, batch info fetch, differential analysis run/redo/remove).
TaxaWebService	RESTful interface for taxa.