Class DatasetsWebService.SequencingQcMetricsValueObject

java.lang.Object

ubic.gemma.rest.DatasetsWebService.SequencingQcMetricsValueObject

Enclosing class:

DatasetsWebService

public static final class DatasetsWebService.SequencingQcMetricsValueObject
extends Object

Wire shape for DatasetsWebService.getDatasetQcMetrics(DatasetArg).

Author:

tesarst

Constructor Summary

Constructors

Constructor	Description
SequencingQcMetricsValueObject(SequencingQcMetrics metrics)

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
List<DatasetsWebService.QcMetricDefinitionValueObject>	getMetrics()	One entry per metric name appearing in DatasetsWebService.SampleQcMetricsValueObject.getValues() or in a sample's runs, in the order MultiQC lists them.
List<DatasetsWebService.SampleQcMetricsValueObject>	getSamples()	One entry per bioAssay of the dataset, ordered by bioAssay id, including assays the report says nothing about.
List<String>	getUnmatchedKeys()	Report row keys that matched no bioAssay — mostly SRA run accessions, which the FASTQ-level modules key by and which Gemma does not record.
int	hashCode()
boolean	isReportPresent()	True when a MultiQC report was found and read.
String	toString()

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

SequencingQcMetricsValueObject

public SequencingQcMetricsValueObject(SequencingQcMetrics metrics)

Method Details

isReportPresent

public boolean isReportPresent()

True when a MultiQC report was found and read. When false the rows carry only DatasetsWebService.SampleQcMetricsValueObject.getReadCount(), taken from the database.

getMetrics

public List<DatasetsWebService.QcMetricDefinitionValueObject> getMetrics()

One entry per metric name appearing in DatasetsWebService.SampleQcMetricsValueObject.getValues() or in a sample's runs, in the order MultiQC lists them. Every field but name may be null: MultiQC's general-stats headers describe only the columns it chose to display.

getSamples

public List<DatasetsWebService.SampleQcMetricsValueObject> getSamples()

One entry per bioAssay of the dataset, ordered by bioAssay id, including assays the report says nothing about.

getUnmatchedKeys

public List<String> getUnmatchedKeys()

Report row keys that matched no bioAssay — mostly SRA run accessions, which the FASTQ-level modules key by and which Gemma does not record.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object