Class AnnotationsWebService.LexicalTermMetadataValueObject

java.lang.Object

ubic.gemma.rest.AnnotationsWebService.LexicalTermMetadataValueObject

Enclosing class:

AnnotationsWebService

public static final class AnnotationsWebService.LexicalTermMetadataValueObject
extends Object

Wire shape for LexicalTermMetadata.

🛑 Gemma does NOT filter these vocabularies by species — every cell line is searchable whatever organism it came from. Restricting the catalogue to the taxa Gemma currently supports was considered and rejected, because a baked-in scope silently drops hits the day the project widens and the failure looks like a broken resolver rather than a policy. Any species scoping belongs to the CALLER, which is why ncbiTaxonId is reported and not just a name.

Author:

tesarst

Constructor Summary

Constructors

Constructor	Description
LexicalTermMetadataValueObject(List<AnnotationsWebService.TaxonValueObject> species, String cellLineType, String sex, String strainType, String problematic)	Creates a new LexicalTermMetadataValueObject instance.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
String	getCellLineType()	Cellosaurus cell-line category, e.g.
String	getProblematic()	Non-null iff the source flags this entry as problematic, carrying the reason — most often Misidentified/contaminated.
String	getSex()	Donor sex where stated.
List<AnnotationsWebService.TaxonValueObject>	getSpecies()	Every organism the entry derives from, in source order.
String	getStrainType()	MGI strain category, e.g.
int	hashCode()
String	toString()

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

LexicalTermMetadataValueObject

public LexicalTermMetadataValueObject(List<AnnotationsWebService.TaxonValueObject> species,
 @Nullable
 String cellLineType,
 @Nullable
 String sex,
 @Nullable
 String strainType,
 @Nullable
 String problematic)

Creates a new LexicalTermMetadataValueObject instance.

Parameters:

species - Every organism the entry derives from, in source order. A LIST because hybridomas and hybrid cell lines genuinely derive from more than one — collapsing them to a single taxon would invent a fact. Empty when the source does not say.

cellLineType - Cellosaurus cell-line category, e.g. Cancer cell line, Hybridoma.

sex - Donor sex where stated. Held apart from cellLineType even though Cellosaurus packs both into one field.

strainType - MGI strain category, e.g. inbred strain, congenic.

problematic - Non-null iff the source flags this entry as problematic, carrying the reason — most often Misidentified/contaminated. Advisory: something a curator should see before picking the term, not a value to tag an experiment with.

Method Details

getSpecies

public List<AnnotationsWebService.TaxonValueObject> getSpecies()

Every organism the entry derives from, in source order. A LIST because hybridomas and hybrid cell lines genuinely derive from more than one — collapsing them to a single taxon would invent a fact. Empty when the source does not say.

getCellLineType

@Nullable
public String getCellLineType()

Cellosaurus cell-line category, e.g. Cancer cell line, Hybridoma.

getSex

@Nullable
public String getSex()

Donor sex where stated. Held apart from cellLineType even though Cellosaurus packs both into one field.

getStrainType

@Nullable
public String getStrainType()

MGI strain category, e.g. inbred strain, congenic.

getProblematic

@Nullable
public String getProblematic()

Non-null iff the source flags this entry as problematic, carrying the reason — most often Misidentified/contaminated. Advisory: something a curator should see before picking the term, not a value to tag an experiment with.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object