Class DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<ExpressionExperimentSubSet>

ubic.gemma.model.expression.experiment.ExpressionExperimentSubsetValueObject

ubic.gemma.rest.DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject

All Implemented Interfaces:

Serializable, Securable, SecureValueObject, Describable, Identifiable, BioAssaySetValueObject

Enclosing class:

DatasetsWebService

public static class DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject
extends ExpressionExperimentSubsetValueObject

Author:

tesarst

See Also:

• Serialized Form

Field Summary

Fields inherited from class IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSubsetWithFactorValuesObject(ExpressionExperimentSubSet subset, Set<FactorValue> factorValues, Map<ArrayDesign, ArrayDesignValueObject> id2advo, boolean includeAssays, Map<BioAssay,BioAssay> assay2sourceAssayMap)

Method Summary

Modifier and Type	Method	Description
List<FactorValueBasicValueObject>	getFactorValues()

Methods inherited from class ExpressionExperimentSubsetValueObject

getAccession, getBioAssays, getCharacteristics, getDescription, getIsPublic, getIsShared, getMinPvalue, getName, getNumberOfBioAssays, getSecurableClass, getSourceExperimentId, getSourceExperimentShortName, getUserCanWrite, getUserOwned, setBioAssays, setCharacteristics, setDescription, setIsPublic, setIsShared, setMinPvalue, setName, setNumberOfBioAssays, setSourceExperimentId, setSourceExperimentShortName, setUserCanWrite, setUserOwned

Methods inherited from class IdentifiableValueObject

canEqual, equals, getId, hashCode, setId, toString

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface Identifiable

getId

Methods inherited from interface Securable

getId

Constructor Details

ExpressionExperimentSubsetWithFactorValuesObject

public ExpressionExperimentSubsetWithFactorValuesObject(ExpressionExperimentSubSet subset,
 @Nullable
 Set<FactorValue> factorValues,
 @Nullable
 Map<ArrayDesign, ArrayDesignValueObject> id2advo,
 boolean includeAssays,
 @Nullable
 Map<BioAssay,BioAssay> assay2sourceAssayMap)

Parameters:

factorValues - the subset's factor values, or null when it has none. 🛑 A single-cell subset is cut from a cell-level characteristic and never carries a factor value (SingleCellExpressionExperimentSubSetServiceImpl copies the characteristic rather than referencing an FV), so the map lookup that feeds this misses and hands over null. Dereferencing it made GET /datasets/{id}/subSetGroups a 500 on exactly the datasets the cell-type work lives on — 44580 failed while 38390, whose subsets are factor-cut, succeeded. Having no factor values is a normal state for a subset, not an error, so it yields an empty list.

Method Details

getFactorValues

public List<FactorValueBasicValueObject> getFactorValues()