Package ubic.gemma.model.expression.experiment

Class ExpressionExperimentSubsetValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<ExpressionExperimentSubSet>

ubic.gemma.model.expression.experiment.ExpressionExperimentSubsetValueObject

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecureValueObject, Serializable, Describable, Identifiable, BioAssaySetValueObject

Direct Known Subclasses:

DatasetsWebService.ExpressionExperimentSubsetWithFactorValuesObject, DatasetsWebService.ExpressionExperimentSubSetWithGroupsValueObject

public class ExpressionExperimentSubsetValueObject
extends IdentifiableValueObject<ExpressionExperimentSubSet>
implements BioAssaySetValueObject

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSubsetValueObject()
ExpressionExperimentSubsetValueObject(ExpressionExperimentSubSet ees)
ExpressionExperimentSubsetValueObject(ExpressionExperimentSubSet ees, Map<ArrayDesign,ArrayDesignValueObject> arrayDesignValueObjectsById, Map<BioAssay,BioAssay> bioAssay2SourceBioAssayMap, boolean includeAssays, boolean basic, boolean allFactorValues)

Method Summary

Modifier and Type	Method	Description
boolean	getIsPublic()
boolean	getIsShared()
Class<? extends Securable>	getSecurableClass()
Long	getSourceExperiment()	Deprecated. use invalid reference #getSourceExperimentId() instead
boolean	getUserCanWrite()
boolean	getUserOwned()
void	setIsPublic(boolean b)
void	setIsShared(boolean b)
void	setUserCanWrite(boolean userCanWrite)
void	setUserOwned(boolean isUserOwned)

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.expression.experiment.BioAssaySetValueObject

getAccession, getCharacteristics, getNumberOfBioAssays

Methods inherited from interface ubic.gemma.model.common.Describable

getDescription, getName

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Details

ExpressionExperimentSubsetValueObject

public ExpressionExperimentSubsetValueObject()

ExpressionExperimentSubsetValueObject

public ExpressionExperimentSubsetValueObject(ExpressionExperimentSubSet ees)

ExpressionExperimentSubsetValueObject

public ExpressionExperimentSubsetValueObject(ExpressionExperimentSubSet ees,
 @Nullable
 Map<ArrayDesign,ArrayDesignValueObject> arrayDesignValueObjectsById,
 @Nullable
 Map<BioAssay,BioAssay> bioAssay2SourceBioAssayMap,
 boolean includeAssays,
 boolean basic,
 boolean allFactorValues)

Parameters:

bioAssay2SourceBioAssayMap - mapping of assays to their source assays

includeAssays - whether to include assays in the serialization

Method Details

getSourceExperiment

@Deprecated
public Long getSourceExperiment()

Deprecated.

use

invalid reference

#getSourceExperimentId()

instead

getSecurableClass

public Class<? extends Securable> getSecurableClass()

Specified by:

getSecurableClass in interface gemma.gsec.model.SecureValueObject

getIsPublic

public boolean getIsPublic()

Specified by:

getIsPublic in interface gemma.gsec.model.SecureValueObject

setIsPublic

public void setIsPublic(boolean b)

Specified by:

setIsPublic in interface gemma.gsec.model.SecureValueObject

getIsShared

public boolean getIsShared()

Specified by:

getIsShared in interface gemma.gsec.model.SecureValueObject

setIsShared

public void setIsShared(boolean b)

Specified by:

setIsShared in interface gemma.gsec.model.SecureValueObject

getUserCanWrite

public boolean getUserCanWrite()

Specified by:

getUserCanWrite in interface gemma.gsec.model.SecureValueObject

setUserCanWrite

public void setUserCanWrite(boolean userCanWrite)

Specified by:

setUserCanWrite in interface gemma.gsec.model.SecureValueObject

getUserOwned

public boolean getUserOwned()

Specified by:

getUserOwned in interface gemma.gsec.model.SecureValueObject

setUserOwned

public void setUserOwned(boolean isUserOwned)

Specified by:

setUserOwned in interface gemma.gsec.model.SecureValueObject