Package ubic.gemma.model.expression.experiment
package ubic.gemma.model.expression.experiment
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ClassDescriptionThe bare minimum to represent a factor value.Represents a batch effect.Represents a set of
BioAssays.Interface for VOs deriving fromBioAssaySet.Report returned byPOST /datasets/{id}/designPreflight.One reason the proposed payload cannot be applied.Full structural representation of anExperimentalDesign: factors, their factor values (with statements carrying stable database IDs), and the assignment of biomaterials to factor values.Assignment of a singleBioMaterial(sample) to its assignedFactorValues.OneExperimentalFactor, with its factor values inlined.ExperimentFactors are the dependent variables of an experiment (e.g., genotype, time, glucose concentration).A minimalistic projection of anExpressionExperiment.A subset of assays (or derived assays) from anExpressionExperiment.Utility methods forExpressionExperimentSubSet.The value for a ExperimentalFactor, representing a specific instance of the factor, such as "10 ug/kg" or "mutant"Each factorvalue can be associated with multiple characteristics (or with a measurement).Deprecated.Represents quality information about a data set.Represents administrative geeq information.Represents publicly available geeq informationSubclass ofInvestigationrepresenting a proposed-but-not-yet-loaded dataset.A special kind of characteristic that act as a statement.Represents a VO for aStatement, typically part of aFactorValueBasicValueObject.
FactorValueBasicValueObject.