Package ubic.gemma.model.expression.experiment

Interface Summary

Interface	Description
BioAssaySetValueObject	Interface for VOs deriving from BioAssaySet.

Class Summary

Class	Description
AbstractFactorValueValueObject	The bare minimum to represent a factor value.
BioAssaySet	Represents a set of BioAssays.
ExperimentalDesign
ExperimentalDesign.Factory
ExperimentalDesignUtils
ExperimentalFactor	ExperimentFactors are the dependent variables of an experiment (e.g., genotype, time, glucose concentration).
ExperimentalFactor.Factory
ExperimentalFactorValueObject
ExpressionExperiment
ExpressionExperiment.Factory
ExpressionExperimentDetailsValueObject
ExpressionExperimentSetValueObject
ExpressionExperimentSubSet	A subset of samples from an ExpressionExperiment
ExpressionExperimentSubSet.Factory
ExpressionExperimentSubsetValueObject
ExpressionExperimentValueObject
FactorValue	The value for a ExperimentalFactor, representing a specific instance of the factor, such as "10 ug/kg" or "mutant"
FactorValue.Factory
FactorValueBasicValueObject	Each factorvalue can be associated with multiple characteristics (or with a measurement).
FactorValueUtils
FactorValueValueObject	Deprecated. aim towards using the FactorValueBasicValueObject.
FreeTextExpressionExperimentResultsValueObject
Geeq	Represents quality information about a data set.
GeeqAdminValueObject	Represents administrative geeq information.
GeeqValueObject	Represents publicly available geeq information
SessionBoundExpressionExperimentSetValueObject
Statement	A special kind of characteristic that act as a statement.
Statement.Factory
StatementUtils
StatementValueObject	Represents a VO for a Statement, typically part of a FactorValueBasicValueObject.

Enum Summary

Enum	Description
BatchEffectType	Represents a batch effect.
FactorType