Package ubic.gemma.model.expression.experiment
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Class Summary Class Description AbstractFactorValueValueObject The bare minimum to represent a factor value.BioAssaySet Represents a set of BioAssays.ExperimentalDesign ExperimentalDesign.Factory ExperimentalDesignUtils ExperimentalFactor ExperimentFactors are the dependent variables of an experiment (e.g., genotype, time, glucose concentration).ExperimentalFactor.Factory ExperimentalFactorValueObject ExpressionExperiment ExpressionExperiment.Factory ExpressionExperimentDetailsValueObject ExpressionExperimentSetValueObject ExpressionExperimentSubSet A subset of samples from an ExpressionExperimentExpressionExperimentSubSet.Factory ExpressionExperimentSubsetValueObject ExpressionExperimentValueObject FactorValue The value for a ExperimentalFactor, representing a specific instance of the factor, such as "10 ug/kg" or "mutant"FactorValue.Factory FactorValueBasicValueObject Each factorvalue can be associated with multiple characteristics (or with a measurement).FactorValueUtils FactorValueValueObject Deprecated. aim towards using theFactorValueBasicValueObject.FreeTextExpressionExperimentResultsValueObject Geeq Represents quality information about a data set.GeeqAdminValueObject Represents administrative geeq information.GeeqValueObject Represents publicly available geeq informationSessionBoundExpressionExperimentSetValueObject Statement A special kind of characteristic that act as a statement.Statement.Factory StatementUtils StatementValueObject Represents a VO for aStatement, typically part of aFactorValueBasicValueObject. -
Enum Summary Enum Description BatchEffectType Represents a batch effect.FactorType