Package ubic.gemma.model.expression.experiment

Class Statement

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.description.Characteristic

ubic.gemma.model.expression.experiment.Statement

All Implemented Interfaces:

Comparable<Characteristic>, Describable, Identifiable

public class Statement
extends Characteristic

A special kind of characteristic that act as a statement.

It can relate to up to two other objects, essentially forming two statements. This is a limited form of RDF-style triplet with the main limitation that a given subject can have up to two predicates and objects.

You can make abstraction of that implementation detail by using getSubject(int), getPredicate(int), getObject(int) and getNumberOfStatements().

Author:

poirigui

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Statement.Factory

Constructor Summary

Constructors

Constructor	Description
Statement()

Method Summary

Modifier and Type	Method	Description
int	compareTo(Characteristic characteristic)
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
int	getNumberOfStatements()
String	getObject()
String	getObject(int index)
String	getObjectUri()
String	getObjectUri(int index)
String	getPredicate()
String	getPredicate(int index)
String	getPredicateUri()
String	getPredicateUri(int index)
String	getSecondObject()
String	getSecondObjectUri()
String	getSecondPredicate()
String	getSecondPredicateUri()
String	getSubject()	Obtain the subject of the statement.
String	getSubject(int index)
String	getSubjectUri()	Obtain the subject URI of the statement.
String	getSubjectUri(int index)
String	getValue()	Deprecated. use getSubject() instead
String	getValueUri()	Deprecated. use getSubjectUri() instead
int	hashCode()	Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
void	setObject(String object)
void	setObjectUri(String objectUri)
void	setPredicate(String predicate)
void	setPredicateUri(String predicateUri)
void	setSecondObject(String secondObject)
void	setSecondObjectUri(String secondObjectUri)
void	setSecondPredicate(String secondPredicate)
void	setSecondPredicateUri(String secondPredicateUri)
void	setSubject(String subject)
void	setSubjectUri(String subject)
void	setValue(String value)	Deprecated. use setSubject(String) instead
void	setValueUri(String uri)	Deprecated. use setSubjectUri(String) instead
String	toString()

Methods inherited from class ubic.gemma.model.common.description.Characteristic

getByCategoryAndValueComparator, getByCategoryComparator, getCategory, getCategoryUri, getComparator, getEvidenceCode, getId, getOriginalValue, isMigratedToStatement, setCategory, setCategoryUri, setEvidenceCode, setMigratedToStatement, setOriginalValue

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

getDescription, getName, setDescription, setName

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

Statement

public Statement()

Method Details

getValue

@Deprecated
public String getValue()

Deprecated.

use getSubject() instead

Overrides:

getValue in class Characteristic

Returns:

The human-readable term (e.g., "OrganismPart"; "kinase")

setValue

@Deprecated
public void setValue(String value)

Deprecated.

use setSubject(String) instead

Overrides:

setValue in class Characteristic

getValueUri

@Deprecated
public String getValueUri()

Deprecated.

use getSubjectUri() instead

Overrides:

getValueUri in class Characteristic

Returns:

This can be a URI to any resources that describes the characteristic. Often it might be a URI to an OWL ontology term. If the URI is an instance of an abstract class, the classUri should be filled in with the URI for the abstract class.

setValueUri

@Deprecated
public void setValueUri(@Nullable
 String uri)

Deprecated.

use setSubjectUri(String) instead

Overrides:

setValueUri in class Characteristic

getSubject

public String getSubject()

Obtain the subject of the statement.

setSubject

public void setSubject(String subject)

getSubjectUri

public String getSubjectUri()

Obtain the subject URI of the statement.

setSubjectUri

public void setSubjectUri(String subject)

getPredicate

@Nullable
@Field
public String getPredicate()

setPredicate

public void setPredicate(@Nullable
 String predicate)

getPredicateUri

@Nullable
@Field(analyze=NO)
public String getPredicateUri()

setPredicateUri

public void setPredicateUri(@Nullable
 String predicateUri)

getObject

@Nullable
@Field
public String getObject()

setObject

public void setObject(@Nullable
 String object)

getObjectUri

@Nullable
@Field(analyze=NO)
public String getObjectUri()

setObjectUri

public void setObjectUri(@Nullable
 String objectUri)

getSecondPredicate

@Nullable
@Field
public String getSecondPredicate()

setSecondPredicate

public void setSecondPredicate(@Nullable
 String secondPredicate)

getSecondPredicateUri

@Nullable
@Field(analyze=NO)
public String getSecondPredicateUri()

setSecondPredicateUri

public void setSecondPredicateUri(@Nullable
 String secondPredicateUri)

getSecondObject

@Nullable
@Field
public String getSecondObject()

setSecondObject

public void setSecondObject(@Nullable
 String secondObject)

getSecondObjectUri

@Nullable
@Field(analyze=NO)
public String getSecondObjectUri()

setSecondObjectUri

public void setSecondObjectUri(@Nullable
 String secondObjectUri)

getSubject

@Nullable
public String getSubject(int index)

getSubjectUri

@Nullable
public String getSubjectUri(int index)

getPredicate

@Nullable
public String getPredicate(int index)

getPredicateUri

@Nullable
public String getPredicateUri(int index)

getObject

@Nullable
public String getObject(int index)

getObjectUri

@Nullable
public String getObjectUri(int index)

getNumberOfStatements

public int getNumberOfStatements()

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Overrides:

equals in class Characteristic

hashCode

public int hashCode()

Description copied from class: AbstractIdentifiable

Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.

Overrides:

hashCode in class Characteristic

compareTo

public int compareTo(@Nonnull
 Characteristic characteristic)

Specified by:

compareTo in interface Comparable<Characteristic>

Overrides:

compareTo in class Characteristic

toString

public String toString()

Overrides:

toString in class Characteristic