Uses of Class
ubic.gemma.model.expression.experiment.Statement

Packages that use Statement

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.expression.experiment

Uses of Statement in ubic.gemma.core.analysis.expression.diff

Methods in ubic.gemma.core.analysis.expression.diff with parameters of type Statement

Modifier and Type	Method	Description
static boolean	BaselineSelection.isBaselineCondition(Statement c)	Check if a given statement indicates a baseline condition.

Uses of Statement in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return Statement

Modifier and Type	Method	Description
static Statement	Statement.Factory.newInstance()
static Statement	Statement.Factory.newInstance(String category, String categoryUri, String subject, String subjectUri)
static Statement	Statement.Factory.newInstance(Category category, String subject, String subjectUri)
static Statement	Statement.Factory.newInstance(Characteristic subject)

Methods in ubic.gemma.model.expression.experiment that return types with arguments of type Statement

Modifier and Type	Method	Description
Set<Statement>	FactorValue.getCharacteristics()	Collection of Statement describing this factor value.

Methods in ubic.gemma.model.expression.experiment with parameters of type Statement

Modifier and Type	Method	Description
static String	StatementUtils.formatStatement(Statement statement)	Format a statement.
static String	StatementUtils.formatStatement(Statement statement, String[] ignoredPredicateUris)	Format a statement.
static boolean	StatementUtils.hasSubject(Statement statement, Characteristic subject)	Test if the given statement has the given subject.
static FactorValue	FactorValue.Factory.newInstance(ExperimentalFactor factor, Statement c)	Create a FactorValue with a single statement.

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type Statement

Modifier and Type	Method	Description
void	FactorValue.setCharacteristics(Set<Statement> characteristics)

Constructors in ubic.gemma.model.expression.experiment with parameters of type Statement

Modifier	Constructor	Description
	FactorValueValueObject(FactorValue fv, Statement c)	Deprecated. Create a FactorValue VO focusing on a specific statement.
	StatementValueObject(Statement s)

Uses of Statement in ubic.gemma.persistence.service.common.description

Methods in ubic.gemma.persistence.service.common.description that return types with arguments of type Statement

Modifier and Type	Method	Description
Collection<Statement>	CharacteristicService.findByObject(String value)
Collection<Statement>	CharacteristicServiceImpl.findByObject(String value)
Collection<Statement>	CharacteristicService.findByObjectUri(String uri)
Collection<Statement>	CharacteristicServiceImpl.findByObjectUri(String uri)
Collection<Statement>	CharacteristicService.findByPredicate(String value)
Collection<Statement>	CharacteristicServiceImpl.findByPredicate(String value)
Collection<Statement>	CharacteristicService.findByPredicateUri(String uri)
Collection<Statement>	CharacteristicServiceImpl.findByPredicateUri(String uri)

Uses of Statement in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return Statement

Modifier and Type	Method	Description
Statement	FactorValueService.createStatement(FactorValue factorValue, Statement statement)	Create a given statement and add it to the given factor value.
Statement	FactorValueServiceImpl.createStatement(FactorValue factorValue, Statement statement)
Statement	FactorValueMigratorService.MigrationResult.getStatement()
Statement	FactorValueService.saveStatement(FactorValue fv, Statement statement)	Create a given statement as per FactorValueService.createStatement(FactorValue, Statement) if it is transient, otherwise update an existing statement.
Statement	FactorValueServiceImpl.saveStatement(FactorValue fv, Statement statement)
Statement	FactorValueService.saveStatementIgnoreAcl(FactorValue fv, Statement statement)	Deprecated. do not use this, it is meant for FactorValue migration only
Statement	FactorValueServiceImpl.saveStatementIgnoreAcl(FactorValue fv, Statement statement)

Methods in ubic.gemma.persistence.service.expression.experiment that return types with arguments of type Statement

Modifier and Type	Method	Description
Collection<Statement>	StatementDao.findByObject(String value)
Collection<Statement>	StatementDaoImpl.findByObject(String value)
Collection<Statement>	StatementDao.findByObjectLike(String s)
Collection<Statement>	StatementDaoImpl.findByObjectLike(String value)
Collection<Statement>	StatementDao.findByObjectUri(String uri)
Collection<Statement>	StatementDaoImpl.findByObjectUri(String uri)
Collection<Statement>	StatementDao.findByPredicate(String value)
Collection<Statement>	StatementDaoImpl.findByPredicate(String value)
Collection<Statement>	StatementDao.findByPredicateLike(String s)
Collection<Statement>	StatementDaoImpl.findByPredicateLike(String value)
Collection<Statement>	StatementDao.findByPredicateUri(String uri)
Collection<Statement>	StatementDaoImpl.findByPredicateUri(String uri)
List<Statement>	ExpressionExperimentDao.getFactorValueAnnotations(ExpressionExperiment ee)	Obtain factor value-level annotations.
List<Statement>	ExpressionExperimentDao.getFactorValueAnnotations(ExpressionExperimentSubSet ee)	Obtain factor value-level annotations for a given subset.
List<Statement>	ExpressionExperimentDaoImpl.getFactorValueAnnotations(ExpressionExperiment ee)
List<Statement>	ExpressionExperimentDaoImpl.getFactorValueAnnotations(ExpressionExperimentSubSet subset)

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type Statement

Modifier and Type	Method	Description
Statement	FactorValueService.createStatement(FactorValue factorValue, Statement statement)	Create a given statement and add it to the given factor value.
Statement	FactorValueServiceImpl.createStatement(FactorValue factorValue, Statement statement)
void	FactorValueService.removeStatement(FactorValue fv, Statement c)	Remove a statement from a factor value.
void	FactorValueServiceImpl.removeStatement(FactorValue fv, Statement statement)
Statement	FactorValueService.saveStatement(FactorValue fv, Statement statement)	Create a given statement as per FactorValueService.createStatement(FactorValue, Statement) if it is transient, otherwise update an existing statement.
Statement	FactorValueServiceImpl.saveStatement(FactorValue fv, Statement statement)
Statement	FactorValueService.saveStatementIgnoreAcl(FactorValue fv, Statement statement)	Deprecated. do not use this, it is meant for FactorValue migration only
Statement	FactorValueServiceImpl.saveStatementIgnoreAcl(FactorValue fv, Statement statement)

Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type Statement

Modifier	Constructor	Description
	MigrationResult(Long factorValueId, Statement statement, boolean created)	Creates a new MigrationResult instance.