| AbstractAnalyzer |
Analyzer base class.
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| AbstractDifferentialExpressionAnalyzer |
An abstract differential expression analyzer to be extended
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| AnalysisSelectionAndExecutionServiceImpl |
A differential expression analysis tool that executes the appropriate analysis based on the number of experimental
factors and factor values, as well as the block design.
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| BaselineSelection |
Utilities for deciding if a factor value is a baseline condition.
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| DifferentialExpressionAnalysisConfig |
Holds the settings used for differential expression analysis, and defines some defaults.
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| DifferentialExpressionAnalysisHelperServiceImpl |
Transactional methods for dealing with differential expression analyses.
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| DifferentialExpressionAnalysisUtil |
A helper class for the differential expression analyzers.
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| DifferentialExpressionAnalyzerServiceImpl |
Differential expression service to run the differential expression analysis (and persist the results using the
appropriate data access objects).
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| DifferentialExpressionFileUtils |
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| DifferentialExpressionMetaAnalysisValueObject |
A value object with meta analysis results.
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| DiffExMetaAnalyzerServiceImpl |
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| DiffExpressionSelectedFactorCommand |
A command object with a selected factor and associated experiment.
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| GeneDifferentialExpressionServiceImpl |
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| GeneDiffExMetaAnalysisHelperServiceImpl |
* @author frances
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| LinearModelAnalyzer |
Handles fitting linear models with continuous or fixed-level covariates.
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