Uses of Package
ubic.gemma.core.analysis.expression.diff
Packages that use ubic.gemma.core.analysis.expression.diff
Package
Description
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Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.analysis.expression.diffClassDescriptionException raised when all analyses fail.Base exception for all differential analysis-related exceptions.Defines the different types of analyses our linear modeling framework supports: GENERICLM - generic linear regression (interactions are omitted, but this could change) OSTTEST - one sample t-test OWA - one-way ANOVA TTEST - two sample t-test TWO_WAY_ANOVA_WITH_INTERACTION TWO_WAY_ANOVA_NO_INTERACTIONHolds the settings used for differential expression analysis, and defines some defaults.Service methods to do database-related work for differential expression analysisA value object with meta analysis results.Used to perform meta-analyses of complete data sets (actually result sets), select the top genes, and potentially store the results.A command object with a selected factor and associated experiment.
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Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.analysis.serviceClassDescriptionHolds the settings used for differential expression analysis, and defines some defaults.
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Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.tasks.analysis.diffexClassDescriptionDefines the different types of analyses our linear modeling framework supports: GENERICLM - generic linear regression (interactions are omitted, but this could change) OSTTEST - one sample t-test OWA - one-way ANOVA TTEST - two sample t-test TWO_WAY_ANOVA_WITH_INTERACTION TWO_WAY_ANOVA_NO_INTERACTION
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Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.web.controller.analysis.expression.diffClassDescriptionA command object with a selected factor and associated experiment.