Uses of Package
ubic.gemma.core.analysis.expression.diff
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Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.analysis.expression.diff Class Description AbstractAnalyzer Analyzer base class.AbstractDifferentialExpressionAnalyzer An abstract differential expression analyzer to be extendedAnalysisSelectionAndExecutionService DifferentialExpressionAnalysisConfig Holds the settings used for differential expression analysis, and defines some defaults.DifferentialExpressionAnalysisHelperService Service methods to do database-related work for differential expression analysisDifferentialExpressionAnalyzerService DifferentialExpressionAnalyzerServiceImpl.AnalysisType Defines the different types of analyses our linear modeling framework supports: GENERICLM - generic linear regression (interactions are omitted, but this could change) OSTTEST - one sample t-test OWA - one-way ANOVA TTEST - two sample t-test TWO_WAY_ANOVA_WITH_INTERACTION TWO_WAY_ANOVA_NO_INTERACTIONDifferentialExpressionMetaAnalysisValueObject A value object with meta analysis results.DiffExAnalyzer DiffExMetaAnalyzerService Used to perform meta-analyses of complete data sets (actually result sets), select the top genes, and potentially store the results.DiffExpressionSelectedFactorCommand A command object with a selected factor and associated experiment.GeneDifferentialExpressionService GeneDiffExMetaAnalysisHelperService -
Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.analysis.service Class Description DifferentialExpressionAnalysisConfig Holds the settings used for differential expression analysis, and defines some defaults. -
Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.core.tasks.analysis.diffex Class Description DifferentialExpressionAnalyzerServiceImpl.AnalysisType Defines the different types of analyses our linear modeling framework supports: GENERICLM - generic linear regression (interactions are omitted, but this could change) OSTTEST - one sample t-test OWA - one-way ANOVA TTEST - two sample t-test TWO_WAY_ANOVA_WITH_INTERACTION TWO_WAY_ANOVA_NO_INTERACTION -
Classes in ubic.gemma.core.analysis.expression.diff used by ubic.gemma.web.controller.diff Class Description DiffExpressionSelectedFactorCommand A command object with a selected factor and associated experiment.