Package ubic.gemma.model.expression.experiment

Class FactorValue

java.lang.Object

ubic.gemma.model.expression.experiment.FactorValue

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredChild, Serializable, Securable, SecuredChild, Identifiable

@Indexed
public class FactorValue
extends Object
implements Identifiable, SecuredChild, Serializable

The value for a ExperimentalFactor, representing a specific instance of the factor, such as "10 ug/kg" or "mutant"

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	FactorValue.Factory

Constructor Summary

Constructors

Constructor	Description
FactorValue()	No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)
Set<Statement>	getCharacteristics()	Collection of Statement describing this factor value.
ExperimentalFactor	getExperimentalFactor()
Long	getId()
Boolean	getIsBaseline()	Indicate if this factor value is a "forced" baseline or non-baseline condition.
Measurement	getMeasurement()	If this is a continuous factor, a measurement representing its value.
boolean	getNeedsAttention()	Indicate if this factor value needs attention.
Set<Characteristic>	getOldStyleCharacteristics()	Deprecated.
ExpressionExperiment	getSecurityOwner()
String	getValue()	Deprecated. use getMeasurement() or getCharacteristics() to retrieve the value.
int	hashCode()
void	setCharacteristics(Set<Statement> characteristics)
void	setExperimentalFactor(ExperimentalFactor experimentalFactor)
void	setId(Long id)
void	setIsBaseline(Boolean isBaseline)
void	setMeasurement(Measurement measurement)
void	setNeedsAttention(boolean troubled)
void	setOldStyleCharacteristics(Set<Characteristic> oldCharacteristics)	Deprecated.
void	setSecurityOwner(ExpressionExperiment ee)
void	setValue(String value)	Deprecated.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

FactorValue

public FactorValue()

No-arg constructor added to satisfy javabean contract

Method Detail

getId

@DocumentId
public Long getId()

Specified by:

getId in interface Identifiable

Specified by:

getId in interface gemma.gsec.model.Securable

setId

public void setId(Long id)

getExperimentalFactor

public ExperimentalFactor getExperimentalFactor()

setExperimentalFactor

public void setExperimentalFactor(ExperimentalFactor experimentalFactor)

getIsBaseline

@Nullable
public Boolean getIsBaseline()

Indicate if this factor value is a "forced" baseline or non-baseline condition.

This is ignored if the factor is continuous.

setIsBaseline

public void setIsBaseline(@Nullable
                          Boolean isBaseline)

getValue

@Nullable
@Deprecated
public String getValue()

Deprecated.

use getMeasurement() or getCharacteristics() to retrieve the value.

setValue

@Deprecated
public void setValue(@Nullable
                     String value)

Deprecated.

getMeasurement

@Nullable
public Measurement getMeasurement()

If this is a continuous factor, a measurement representing its value.

setMeasurement

public void setMeasurement(@Nullable
                           Measurement measurement)

getCharacteristics

@IndexedEmbedded
public Set<Statement> getCharacteristics()

Collection of Statement describing this factor value.

setCharacteristics

public void setCharacteristics(Set<Statement> characteristics)

getOldStyleCharacteristics

@Deprecated
public Set<Characteristic> getOldStyleCharacteristics()

Deprecated.

Old-style characteristics from the 1.30 series.

This will be removed when all the characteristics are ported to the new style using Statement.

setOldStyleCharacteristics

@Deprecated
public void setOldStyleCharacteristics(Set<Characteristic> oldCharacteristics)

Deprecated.

getNeedsAttention

public boolean getNeedsAttention()

Indicate if this factor value needs attention.

If this is the case, there might be a FactorValueNeedsAttentionEvent event attached to the owning ExpressionExperiment with additional details.

setNeedsAttention

public void setNeedsAttention(boolean troubled)

getSecurityOwner

public ExpressionExperiment getSecurityOwner()

Specified by:

getSecurityOwner in interface gemma.gsec.model.SecuredChild

Specified by:

getSecurityOwner in interface SecuredChild

setSecurityOwner

public void setSecurityOwner(ExpressionExperiment ee)

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object object)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object