Package ubic.gemma.model.expression.experiment

Class ExperimentalDesignUtils

java.lang.Object

ubic.gemma.model.expression.experiment.ExperimentalDesignUtils

@ParametersAreNonnullByDefault
public class ExperimentalDesignUtils
extends Object

Author:

paul

Constructor Summary

Constructors

Constructor	Description
ExperimentalDesignUtils()

Method Summary

Modifier and Type	Method	Description
static Map<ExperimentalFactor,Map<BioMaterial,FactorValue>>	getFactorValueMap(Collection<ExperimentalFactor> factors, Collection<BioMaterial> samples)
static Map<ExperimentalFactor,Map<BioMaterial,FactorValue>>	getFactorValueMap(ExperimentalDesign experimentalDesign, Collection<BioMaterial> samples)	Create a mapping of samples to factor values for all factors in the experimental design.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExperimentalDesignUtils

public ExperimentalDesignUtils()

Method Details

getFactorValueMap

public static Map<ExperimentalFactor,Map<BioMaterial,FactorValue>> getFactorValueMap(ExperimentalDesign experimentalDesign,
 Collection<BioMaterial> samples)

Create a mapping of samples to factor values for all factors in the experimental design.

The resulting map will be populated for every factor in the design and every provided sample. If a sample is lacking a particular value is missing, a null will be used. If a sample has more than one value, a IllegalStateException will be raised.

Throws:

IllegalStateException - if a sample has more than one value any factor in the design

getFactorValueMap

public static Map<ExperimentalFactor,Map<BioMaterial,FactorValue>> getFactorValueMap(Collection<ExperimentalFactor> factors,
 Collection<BioMaterial> samples)