Package ubic.gemma.model.expression.experiment

Class BioAssaySet

java.lang.Object

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

ubic.gemma.model.analysis.Investigation

ubic.gemma.model.expression.experiment.BioAssaySet

All Implemented Interfaces:

gemma.gsec.model.Securable, Serializable, Auditable, Securable, Describable, Identifiable

Direct Known Subclasses:

ExpressionExperiment, ExpressionExperimentSubSet

public abstract class BioAssaySet
extends Investigation

Represents a set of BioAssays. This is not associated with any actual data, and soley represents a logical grouping of "samples" that can be used for any purpose. These could be a published grouping, or a subset of samples from a published study.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
BioAssaySet()

Method Summary

Modifier and Type	Method	Description
abstract ExpressionExperimentValueObject	createValueObject()	Special use case.
DatabaseEntry	getAccession()
Set<BioAssay>	getBioAssays()
void	setAccession(DatabaseEntry accession)
void	setBioAssays(Set<BioAssay> bioAssays)

Methods inherited from class ubic.gemma.model.analysis.Investigation

getCharacteristics, getOtherRelevantPublications, getOwner, getPrimaryPublication, setCharacteristics, setOtherRelevantPublications, setOwner, setPrimaryPublication

Methods inherited from class ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

getAuditTrail, setAuditTrail

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Detail

BioAssaySet

public BioAssaySet()

Method Detail

getAccession

@Nullable
public DatabaseEntry getAccession()

setAccession

public void setAccession(@Nullable
                         DatabaseEntry accession)

getBioAssays

public Set<BioAssay> getBioAssays()

setBioAssays

public void setBioAssays(Set<BioAssay> bioAssays)

createValueObject

public abstract ExpressionExperimentValueObject createValueObject()

Special use case. Use a constructor of the desired VO instead, or the loadValueObject() in all VO-Enabled services.

Returns:

an expression experiment value object.