Package ubic.gemma.rest

Class AnalysisResultSetsWebService

java.lang.Object

ubic.gemma.rest.AnalysisResultSetsWebService

@Service
@Path("/resultSets")
public class AnalysisResultSetsWebService
extends Object

Endpoint for AnalysisResultSet

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AnalysisResultSetsWebService.PaginatedResultsResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject	Similar to PaginatedResponseDataObject, but the data.results is paginated instead of data

Field Summary

Fields

Modifier and Type	Field	Description
static final String	TEXT_TAB_SEPARATED_VALUES_UTF8_Q9

Constructor Summary

Constructors

Constructor	Description
AnalysisResultSetsWebService()

Method Summary

Modifier and Type	Method	Description
ResponseDataObject<Long>	getNumberOfResultSets(FilterArg<ExpressionAnalysisResultSet> filter)
Object	getResultSet(ExpressionAnalysisResultSetArg analysisResultSet, Double threshold, OffsetArg offsetArg, LimitArg limitArg, Boolean includeFactorValuesInContrasts, Boolean includeTaxonInGenes, Boolean excludeResults, javax.ws.rs.core.HttpHeaders headers)	Retrieve a AnalysisResultSet given its identifier.
FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject>	getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort)	Retrieve all AnalysisResultSet matching a set of criteria.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

TEXT_TAB_SEPARATED_VALUES_UTF8_Q9

public static final String TEXT_TAB_SEPARATED_VALUES_UTF8_Q9

See Also:

• Constant Field Values

Constructor Details

AnalysisResultSetsWebService

public AnalysisResultSetsWebService()

Method Details

getResultSets

@GET
@Produces("application/json")
public FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject> getResultSets(@QueryParam("datasets")
 DatasetArrayArg datasets,
 @QueryParam("databaseEntries")
 DatabaseEntryArrayArg databaseEntries,
 @QueryParam("filter") @DefaultValue("")
 FilterArg<ExpressionAnalysisResultSet> filters,
 @QueryParam("offset") @DefaultValue("0")
 OffsetArg offset,
 @QueryParam("limit") @DefaultValue("20")
 LimitArg limit,
 @QueryParam("sort") @DefaultValue("+id")
 SortArg<ExpressionAnalysisResultSet> sort)

Retrieve all AnalysisResultSet matching a set of criteria.

Parameters:

datasets - filter result sets that belong to any of the provided dataset identifiers, or null to ignore

databaseEntries - filter by associated datasets with given external identifiers, or null to ignore

getNumberOfResultSets

@GET
@Path("/count")
@Produces("application/json")
public ResponseDataObject<Long> getNumberOfResultSets(@QueryParam("filter") @DefaultValue("")
 FilterArg<ExpressionAnalysisResultSet> filter)

getResultSet

@GZIP
@GET
@Path("/{resultSet}")
@Produces({"application/json","text/tab-separated-values; charset=UTF-8; q=0.9"})
public Object getResultSet(@PathParam("resultSet")
 ExpressionAnalysisResultSetArg analysisResultSet,
 @QueryParam("threshold")
 Double threshold,
 @QueryParam("offset")
 OffsetArg offsetArg,
 @QueryParam("limit")
 LimitArg limitArg,
 @QueryParam("includeFactorValuesInContrasts")
 Boolean includeFactorValuesInContrasts,
 @QueryParam("includeTaxonInGenes")
 Boolean includeTaxonInGenes,
 @QueryParam("excludeResults") @DefaultValue("false")
 Boolean excludeResults,
 @Context
 javax.ws.rs.core.HttpHeaders headers)

Retrieve a AnalysisResultSet given its identifier.