Package ubic.gemma.model.analysis.expression.diff

Class DifferentialExpressionAnalysisResultSetValueObject

java.lang.Object

ubic.gemma.model.IdentifiableValueObject<R>

ubic.gemma.model.analysis.AnalysisResultSetValueObject<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>

ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResultSetValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class DifferentialExpressionAnalysisResultSetValueObject
extends AnalysisResultSetValueObject<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>

Wraps an ExpressionAnalysisResultSet and expose it to the public API.

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionAnalysisResultSetValueObject()
DifferentialExpressionAnalysisResultSetValueObject(ExpressionAnalysisResultSet analysisResultSet)	Create a simple analysis results set VO with limited data.
DifferentialExpressionAnalysisResultSetValueObject(ExpressionAnalysisResultSet analysisResultSet, Map<Long,List<Gene>> result2Genes)	Create an expression analysis result set VO with all its associated results.

Method Summary

Modifier and Type	Method	Description
DifferentialExpressionAnalysisValueObject	getAnalysis()
FactorValueBasicValueObject	getBaselineGroup()
Collection<ExperimentalFactorValueObject>	getExperimentalFactors()
Collection<DifferentialExpressionAnalysisResultValueObject>	getResults()	Obtain the VO of the associated analysis result to this result set.
void	setAnalysis(DifferentialExpressionAnalysisValueObject analysis)
void	setBaselineGroup(FactorValueBasicValueObject baselineGroup)
void	setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)
void	setResults(Collection<DifferentialExpressionAnalysisResultValueObject> results)

Methods inherited from class ubic.gemma.model.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DifferentialExpressionAnalysisResultSetValueObject

public DifferentialExpressionAnalysisResultSetValueObject()

DifferentialExpressionAnalysisResultSetValueObject

public DifferentialExpressionAnalysisResultSetValueObject(ExpressionAnalysisResultSet analysisResultSet)

Create a simple analysis results set VO with limited data.

DifferentialExpressionAnalysisResultSetValueObject

public DifferentialExpressionAnalysisResultSetValueObject(ExpressionAnalysisResultSet analysisResultSet,
                                                          Map<Long,List<Gene>> result2Genes)

Create an expression analysis result set VO with all its associated results. Note: this constructor assumes that ExpressionAnalysisResultSet.getResults() has already been initialized.

Method Detail

getAnalysis

public DifferentialExpressionAnalysisValueObject getAnalysis()

setAnalysis

public void setAnalysis(DifferentialExpressionAnalysisValueObject analysis)

getExperimentalFactors

public Collection<ExperimentalFactorValueObject> getExperimentalFactors()

setExperimentalFactors

public void setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)

getBaselineGroup

public FactorValueBasicValueObject getBaselineGroup()

setBaselineGroup

public void setBaselineGroup(FactorValueBasicValueObject baselineGroup)

getResults

public Collection<DifferentialExpressionAnalysisResultValueObject> getResults()

Description copied from class: AnalysisResultSetValueObject

Obtain the VO of the associated analysis result to this result set.

Specified by:

getResults in class AnalysisResultSetValueObject<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>

setResults

public void setResults(Collection<DifferentialExpressionAnalysisResultValueObject> results)