Uses of Class
ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResultSetValueObject

Packages that use DifferentialExpressionAnalysisResultSetValueObject

Package	Description
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Subclasses with type arguments of type DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Class	Description
class	ExpressionAnalysisResultSetDaoImpl
class	ExpressionAnalysisResultSetServiceImpl

Subinterfaces with type arguments of type DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Modifier and Type	Interface	Description
interface	ExpressionAnalysisResultSetDao
interface	ExpressionAnalysisResultSetService	🔒 The loaders below are ACL-guarded.

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
protected DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDaoImpl.doLoadValueObject(ExpressionAnalysisResultSet entity)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDao.loadValueObjectWithResults(ExpressionAnalysisResultSet resultSet, boolean includeFactorValuesInContrasts, boolean queryGenesByResult, boolean includeTaxonInGenes)	Load an analysis result set with its all of its associated results.
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDaoImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet entity, boolean includeFactorValuesInContrasts, boolean queryGenesByResult, boolean includeTaxonInGenes)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetService.loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetServiceImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes)

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return types with arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)	Cursor-paged counterpart to ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort): keyset pagination over the result sets associated to a set of BioAssaySet and external database entries, always sorted by ascending id.
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDaoImpl.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, Cursor cursor, int limit)	Cursor-paged counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort).
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetServiceImpl.findByBioAssaySetInAndDatabaseEntryInByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, Cursor cursor, int limit)
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort)	Retrieve result sets associated to a set of BioAssaySet and external database entries.
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDaoImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort)
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetServiceImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)

Method parameters in ubic.gemma.persistence.service.analysis.expression.diff with type arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
protected void	ExpressionAnalysisResultSetDaoImpl.postProcessValueObjects(List<DifferentialExpressionAnalysisResultSetValueObject> differentialExpressionAnalysisResultSetValueObjects)

Uses of DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.rest

Subclasses with type arguments of type DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.rest

Modifier and Type	Class	Description
static class	AnalysisResultSetsWebService.PaginatedResultsResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject	Similar to PaginatedResponseDataObject, but the data.results is paginated instead of data

Constructors in ubic.gemma.rest with parameters of type DifferentialExpressionAnalysisResultSetValueObject

Modifier	Constructor	Description
	PaginatedResultsResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject(DifferentialExpressionAnalysisResultSetValueObject resultSet, Double threshold, int offset, int limit, long totalElements)

Uses of DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return types with arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetArgService.getResultSetsByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort).