Uses of Class
ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResultSetValueObject

Packages that use DifferentialExpressionAnalysisResultSetValueObject

Package	Description
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.rest

Uses of DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
protected DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDaoImpl.doLoadValueObject(ExpressionAnalysisResultSet entity)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDao.loadValueObjectWithResults(ExpressionAnalysisResultSet resultSet, boolean includeFactorValuesInContrasts, boolean queryGenesByResult, boolean includeTaxonInGenes)	Load an analysis result set with its all of its associated results.
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetDaoImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet entity, boolean includeFactorValuesInContrasts, boolean queryGenesByResult, boolean includeTaxonInGenes)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetService.loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes)
DifferentialExpressionAnalysisResultSetValueObject	ExpressionAnalysisResultSetServiceImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet ears, boolean includeFactorValuesInContrasts, boolean queryByResult, boolean includeTaxonInGenes)

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return types with arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDao.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort)	Retrieve result sets associated to a set of BioAssaySet and external database entries.
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetDaoImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, int offset, int limit, Sort sort)
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)
Slice<DifferentialExpressionAnalysisResultSetValueObject>	ExpressionAnalysisResultSetServiceImpl.findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)

Method parameters in ubic.gemma.persistence.service.analysis.expression.diff with type arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
protected void	ExpressionAnalysisResultSetDaoImpl.postProcessValueObjects(List<DifferentialExpressionAnalysisResultSetValueObject> differentialExpressionAnalysisResultSetValueObjects)

Uses of DifferentialExpressionAnalysisResultSetValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type DifferentialExpressionAnalysisResultSetValueObject

Modifier and Type	Method	Description
FilteredAndPaginatedResponseDataObject<DifferentialExpressionAnalysisResultSetValueObject>	AnalysisResultSetsWebService.getResultSets(DatasetArrayArg datasets, DatabaseEntryArrayArg databaseEntries, FilterArg<ExpressionAnalysisResultSet> filters, OffsetArg offset, LimitArg limit, SortArg<ExpressionAnalysisResultSet> sort)	Retrieve all AnalysisResultSet matching a set of criteria.

Constructors in ubic.gemma.rest with parameters of type DifferentialExpressionAnalysisResultSetValueObject

Modifier	Constructor	Description
	PaginatedResultsResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject(DifferentialExpressionAnalysisResultSetValueObject resultSet, Double threshold, int offset, int limit, long totalElements)