Class ExpressionAnalysisResultSetServiceImpl
- java.lang.Object
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- ubic.gemma.persistence.service.AbstractService<O>
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- ubic.gemma.persistence.service.AbstractFilteringVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>
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- ubic.gemma.persistence.service.analysis.expression.diff.ExpressionAnalysisResultSetServiceImpl
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- All Implemented Interfaces:
AnalysisResultSetService<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>
,ExpressionAnalysisResultSetService
,BaseImmutableService<ExpressionAnalysisResultSet>
,BaseReadOnlyService<ExpressionAnalysisResultSet>
,BaseService<ExpressionAnalysisResultSet>
,BaseVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>
,FilteringService<ExpressionAnalysisResultSet>
,FilteringVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>
@Service public class ExpressionAnalysisResultSetServiceImpl extends AbstractFilteringVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject> implements ExpressionAnalysisResultSetService
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Field Summary
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Fields inherited from class ubic.gemma.persistence.service.AbstractService
log
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Constructor Summary
Constructors Constructor Description ExpressionAnalysisResultSetServiceImpl(ExpressionAnalysisResultSetDao voDao)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Slice<DifferentialExpressionAnalysisResultSetValueObject>
findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)
Map<Long,List<Gene>>
loadResultIdToGenesMap(ExpressionAnalysisResultSet resultSet)
DifferentialExpressionAnalysisResultSetValueObject
loadValueObjectWithResults(ExpressionAnalysisResultSet ears)
ExpressionAnalysisResultSet
loadWithExperimentAnalyzed(Long id)
ExpressionAnalysisResultSet
loadWithResultsAndContrasts(Long value)
ExpressionAnalysisResultSet
thaw(ExpressionAnalysisResultSet ears)
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Methods inherited from class ubic.gemma.persistence.service.AbstractFilteringVoEnabledService
count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getIdentifierPropertyName, getSort, load, load, loadAllValueObjects, loadIds, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjects, loadValueObjects, loadValueObjectsByIds
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Methods inherited from class ubic.gemma.persistence.service.AbstractService
countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, update, update
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService
create, create, findOrCreate, remove, remove, remove
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Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService
countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail
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Methods inherited from interface ubic.gemma.persistence.service.BaseService
save, save, update, update
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Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService
loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds
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Methods inherited from interface ubic.gemma.persistence.service.FilteringService
count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getIdentifierPropertyName, getSort, load, load, loadIds
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Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledService
loadValueObjects, loadValueObjects
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Constructor Detail
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ExpressionAnalysisResultSetServiceImpl
@Autowired public ExpressionAnalysisResultSetServiceImpl(ExpressionAnalysisResultSetDao voDao)
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Method Detail
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loadWithResultsAndContrasts
@Transactional(readOnly=true) public ExpressionAnalysisResultSet loadWithResultsAndContrasts(Long value)
- Specified by:
loadWithResultsAndContrasts
in interfaceExpressionAnalysisResultSetService
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thaw
@Transactional(readOnly=true) public ExpressionAnalysisResultSet thaw(ExpressionAnalysisResultSet ears)
- Specified by:
thaw
in interfaceExpressionAnalysisResultSetService
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loadWithExperimentAnalyzed
@Transactional(readOnly=true) public ExpressionAnalysisResultSet loadWithExperimentAnalyzed(Long id)
- Specified by:
loadWithExperimentAnalyzed
in interfaceExpressionAnalysisResultSetService
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loadValueObjectWithResults
@Transactional(readOnly=true) public DifferentialExpressionAnalysisResultSetValueObject loadValueObjectWithResults(ExpressionAnalysisResultSet ears)
- Specified by:
loadValueObjectWithResults
in interfaceExpressionAnalysisResultSetService
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loadResultIdToGenesMap
@Transactional(readOnly=true) public Map<Long,List<Gene>> loadResultIdToGenesMap(ExpressionAnalysisResultSet resultSet)
- Specified by:
loadResultIdToGenesMap
in interfaceExpressionAnalysisResultSetService
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findByBioAssaySetInAndDatabaseEntryInLimit
@Transactional(readOnly=true) public Slice<DifferentialExpressionAnalysisResultSetValueObject> findByBioAssaySetInAndDatabaseEntryInLimit(@Nullable Collection<BioAssaySet> bioAssaySets, @Nullable Collection<DatabaseEntry> externalIds, @Nullable Filters filters, int offset, int limit, @Nullable Sort sort)
- Specified by:
findByBioAssaySetInAndDatabaseEntryInLimit
in interfaceExpressionAnalysisResultSetService
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