Package ubic.gemma.persistence.service.analysis.expression.diff

Interface ExpressionAnalysisResultSetService

All Superinterfaces:

AnalysisResultSetService<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>, BaseReadOnlyService<ExpressionAnalysisResultSet>, BaseVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>, FilteringService<ExpressionAnalysisResultSet>, FilteringVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>

All Known Implementing Classes:

ExpressionAnalysisResultSetServiceImpl

public interface ExpressionAnalysisResultSetService
extends AnalysisResultSetService<DifferentialExpressionAnalysisResult,ExpressionAnalysisResultSet>, FilteringVoEnabledService<ExpressionAnalysisResultSet,DifferentialExpressionAnalysisResultSetValueObject>

Method Summary

Modifier and Type	Method	Description
Slice<DifferentialExpressionAnalysisResultSetValueObject>	findByBioAssaySetInAndDatabaseEntryInLimit(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> externalIds, Filters filters, int offset, int limit, Sort sort)
Map<Long,List<Gene>>	loadResultIdToGenesMap(ExpressionAnalysisResultSet ears)
DifferentialExpressionAnalysisResultSetValueObject	loadValueObjectWithResults(ExpressionAnalysisResultSet ears)
ExpressionAnalysisResultSet	loadWithExperimentAnalyzed(Long id)
ExpressionAnalysisResultSet	loadWithResultsAndContrasts(Long value)
ExpressionAnalysisResultSet	thaw(ExpressionAnalysisResultSet e)

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringService

count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getIdentifierPropertyName, getSort, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledService

loadValueObjects, loadValueObjects

Method Detail

loadWithResultsAndContrasts

ExpressionAnalysisResultSet loadWithResultsAndContrasts(Long value)

thaw

@CheckReturnValue
ExpressionAnalysisResultSet thaw(ExpressionAnalysisResultSet e)

loadWithExperimentAnalyzed

ExpressionAnalysisResultSet loadWithExperimentAnalyzed(Long id)

loadValueObjectWithResults

DifferentialExpressionAnalysisResultSetValueObject loadValueObjectWithResults(ExpressionAnalysisResultSet ears)

loadResultIdToGenesMap

Map<Long,List<Gene>> loadResultIdToGenesMap(ExpressionAnalysisResultSet ears)

findByBioAssaySetInAndDatabaseEntryInLimit

Slice<DifferentialExpressionAnalysisResultSetValueObject> findByBioAssaySetInAndDatabaseEntryInLimit(@Nullable
                                                                                                     Collection<BioAssaySet> bioAssaySets,
                                                                                                     @Nullable
                                                                                                     Collection<DatabaseEntry> externalIds,
                                                                                                     @Nullable
                                                                                                     Filters filters,
                                                                                                     int offset,
                                                                                                     int limit,
                                                                                                     @Nullable
                                                                                                     Sort sort)