Class ExpressionAnalysisResultSet

    • Constructor Detail

      • ExpressionAnalysisResultSet

        public ExpressionAnalysisResultSet()
    • Method Detail

      • getBaselineGroup

        public FactorValue getBaselineGroup()
        Returns:
        The group considered baseline when computing scores and 'upRegulated'. This might be a control group if it could be recognized. For continuous factors, this would be null. For interaction terms we do not compute this so it will also be null.
      • setBaselineGroup

        public void setBaselineGroup​(FactorValue baselineGroup)
      • setHitListSizes

        public void setHitListSizes​(Set<HitListSize> hitListSizes)
      • getNumberOfGenesTested

        public Integer getNumberOfGenesTested()
        Returns:
        How many genes were tested in the result set. This is determined based on the annotations at one point in time, so might slightly differ if the platform annotations have been updated since.
      • setNumberOfGenesTested

        public void setNumberOfGenesTested​(Integer numberOfGenesTested)
      • getNumberOfProbesTested

        public Integer getNumberOfProbesTested()
        Returns:
        How many probes were tested in this result set.
      • setNumberOfProbesTested

        public void setNumberOfProbesTested​(Integer numberOfProbesTested)
      • setPvalueDistribution

        public void setPvalueDistribution​(PvalueDistribution pvalueDistribution)
      • getSecurityOwner

        public gemma.gsec.model.Securable getSecurityOwner()
        Specified by:
        getSecurityOwner in interface gemma.gsec.model.SecuredChild