DifferentialExpressionAnalysis (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.model.common.AbstractIdentifiable
- - ubic.gemma.model.common.AbstractDescribable
  - - ubic.gemma.model.analysis.Analysis
    - - ubic.gemma.model.analysis.expression.ExpressionAnalysis
      - ubic.gemma.model.analysis.SingleExperimentAnalysis
        
        ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysis

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredChild, Securable, SecuredChild, Describable, Identifiable
```
public class DifferentialExpressionAnalysis
extends SingleExperimentAnalysis
```
An analysis of changes in expression levels across experimental conditions

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class DifferentialExpressionAnalysis.Factory

Constructor Summary

Constructors
Constructor Description

DifferentialExpressionAnalysis()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object object)`	Important note: Two objects with the same class and non-null ID must be considered equal.
`Set<ExpressionAnalysisResultSet>`	`getResultSets()`	Groups of results produced by this differential expression analysis.
`FactorValue`	`getSubsetFactorValue()`	If non-null, a factor value applicable to the `ExpressionExperimentSubSet` being analyzed.
`void`	`setResultSets(Set<ExpressionAnalysisResultSet> resultSets)`
`void`	`setSubsetFactorValue(FactorValue subsetFactorValue)`

Methods inherited from class ubic.gemma.model.analysis.SingleExperimentAnalysis
getExperimentAnalyzed, getNumberOfElementsAnalyzed, getSecurityOwner, setExperimentAnalyzed, setNumberOfElementsAnalyzed

Methods inherited from class ubic.gemma.model.analysis.Analysis
getProtocol, setProtocol

Methods inherited from class ubic.gemma.model.common.AbstractDescribable
getDescription, getName, hashCode, setDescription, setName, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable
getId, setId

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable
getId

Methods inherited from interface gemma.gsec.model.Securable
getId

- Constructor Detail
  - DifferentialExpressionAnalysis
```
public DifferentialExpressionAnalysis()
```
- Method Detail
  - getResultSets
```
public Set<ExpressionAnalysisResultSet> getResultSets()
```
    Groups of results produced by this differential expression analysis.
    For example, in a two-way ANOVA, the model has 2 or 3 parameters. The statistical significance tests for each of the effects in the model are stored as separate ExpressionAnalysisResultSet objects. Thus, a two-way ANOVA with interactions will have three result sets: the two main effects and the interaction effect.
  - setResultSets
```
public void setResultSets(Set<ExpressionAnalysisResultSet> resultSets)
```
  - getSubsetFactorValue
```
@Nullable
public FactorValue getSubsetFactorValue()
```
    If non-null, a factor value applicable to the ExpressionExperimentSubSet being analyzed.
  - setSubsetFactorValue
```
public void setSubsetFactorValue(@Nullable
                                 FactorValue subsetFactorValue)
```
  - equals
```
public boolean equals(Object object)
```
    Description copied from class: AbstractIdentifiable
    
    Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
    
    Specified by:
    
    equals in class AbstractIdentifiable