DifferentialExpressionAnalysis (Gemma 1.31.13 API)

java.lang.Object
- ubic.gemma.model.common.AbstractDescribable
- - ubic.gemma.model.analysis.Analysis
  - - ubic.gemma.model.analysis.expression.ExpressionAnalysis
    - - ubic.gemma.model.analysis.SingleExperimentAnalysis
      - ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysis

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredChild, Serializable, Securable, SecuredChild, Describable, Identifiable
```
public class DifferentialExpressionAnalysis
extends SingleExperimentAnalysis
```
An analysis of changes in expression levels across experimental conditions

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class DifferentialExpressionAnalysis.Factory

Constructor Summary

Constructors
Constructor Description

DifferentialExpressionAnalysis()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Set<ExpressionAnalysisResultSet>`	`getResultSets()`	Groups of results produced by this differential expression analysis.
`FactorValue`	`getSubsetFactorValue()`	If non-null, a factor value applicable to the `ExpressionExperimentSubSet` being analyzed.
`void`	`setResultSets(Set<ExpressionAnalysisResultSet> resultSets)`
`void`	`setSubsetFactorValue(FactorValue subsetFactorValue)`

Methods inherited from class ubic.gemma.model.analysis.SingleExperimentAnalysis
getExperimentAnalyzed, getNumberOfElementsAnalyzed, getSecurityOwner, setExperimentAnalyzed, setNumberOfElementsAnalyzed

Methods inherited from class ubic.gemma.model.analysis.Analysis
getProtocol, setProtocol

Methods inherited from class ubic.gemma.model.common.AbstractDescribable
equals, getDescription, getId, getName, hashCode, setDescription, setId, setName, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable
getId

Methods inherited from interface gemma.gsec.model.Securable
getId

- Constructor Detail
  - DifferentialExpressionAnalysis
```
public DifferentialExpressionAnalysis()
```
- Method Detail
  - getResultSets
```
public Set<ExpressionAnalysisResultSet> getResultSets()
```
    Groups of results produced by this differential expression analysis.
    For example, in a two-way ANOVA, the model has 2 or 3 parameters. The statistical significance tests for each of the effects in the model are stored as separate ExpressionAnalysisResultSet objects. Thus, a two-way ANOVA with interactions will have three result sets: the two main effects and the interaction effect.
  - setResultSets
```
public void setResultSets(Set<ExpressionAnalysisResultSet> resultSets)
```
  - getSubsetFactorValue
```
@Nullable
public FactorValue getSubsetFactorValue()
```
    If non-null, a factor value applicable to the ExpressionExperimentSubSet being analyzed.
  - setSubsetFactorValue
```
public void setSubsetFactorValue(@Nullable
                                 FactorValue subsetFactorValue)
```