Package ubic.gemma.model.analysis.expression.diff
package ubic.gemma.model.analysis.expression.diff
-
ClassDescriptionRepresents a baseline for a single factor or an interaction of factors.Represents a contrast.Represents a contrast between "conditions".Represents a contrast result.Stores selected details of the contrasts for a single DifferentialExpressionResultHelper object, not for general use.An analysis of changes in expression levels across experimental conditionsResult of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.Wraps an
ExpressionAnalysisResultSetand expose it to the public API.UnlikeDiffExResultSetSummaryValueObject, this value object is meant for the public API.Summary of a differential expression analysisRepresents the results for one probe.Value object for differential expression result for one result - corresponds to the DifferentialExpressionAnalysisResults for one gene in one ResultSet (combined for multiple probes), but represents only the "selected" analysisResult.Summary of a result set.Represents the direction of a change e.g. in expression.A group of results for an ExpressionExperiment.Represents an analysis that combines the results of other analyses of differential expression.The number of probes meeting a given q-value threshold in the result set.Utilities for generating randomDifferentialExpressionAnalysisfor testing purposes.