| Baseline |
Represents a baseline for a single factor or an interaction of factors.
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| Contrast |
Represents a contrast.
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| ContrastResult |
Represents a contrast between "conditions".
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| ContrastResult.Factory |
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| ContrastResultValueObject |
Represents a contrast result.
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| ContrastsValueObject |
Stores selected details of the contrasts for a single DifferentialExpressionResult
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| ContrastVO |
Helper object, not for general use.
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| DifferentialExpressionAnalysis |
An analysis of changes in expression levels across experimental conditions
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| DifferentialExpressionAnalysis.Factory |
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| DifferentialExpressionAnalysisResult |
Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one
factor.
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| DifferentialExpressionAnalysisResult.Factory |
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| DifferentialExpressionAnalysisResultSetValueObject |
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| DifferentialExpressionAnalysisResultValueObject |
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| DifferentialExpressionAnalysisValueObject |
Summary of a differential expression analysis
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| DifferentialExpressionValueObject |
Represents the results for one probe.
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| DiffExprGeneSearchResult |
Value object for differential expression result for one result - corresponds to the
DifferentialExpressionAnalysisResults for one gene in one ResultSet (combined for multiple probes), but represents
only the "selected" analysisResult.
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| DiffExResultSetSummaryValueObject |
Summary of a result set.
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| ExpressionAnalysisResultSet |
A group of results for an ExpressionExperiment.
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| ExpressionAnalysisResultSet.Factory |
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| GeneDifferentialExpressionMetaAnalysis |
Represents an analysis that combines the results of other analyses of differential expression.
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| GeneDifferentialExpressionMetaAnalysis.Factory |
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| GeneDifferentialExpressionMetaAnalysisDetailValueObject |
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| GeneDifferentialExpressionMetaAnalysisResult |
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| GeneDifferentialExpressionMetaAnalysisResult.Factory |
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| GeneDifferentialExpressionMetaAnalysisResultValueObject |
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| GeneDifferentialExpressionMetaAnalysisSummaryValueObject |
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| HitListSize |
The number of probes meeting a given q-value threshold in the result set.
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| HitListSize.Factory |
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| IncludedResultSetInfoValueObject |
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| PvalueDistribution |
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| PvalueDistribution.Factory |
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