Class DifferentialExpressionAnalysisResultValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<DifferentialExpressionAnalysisResult>

ubic.gemma.model.analysis.AnalysisResultValueObject<DifferentialExpressionAnalysisResult>

ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResultValueObject

All Implemented Interfaces:

Serializable, Identifiable

Direct Known Subclasses:

DatasetsWebService.DifferentialExpressionAnalysisResultByGeneValueObject

public class DifferentialExpressionAnalysisResultValueObject
extends AnalysisResultValueObject<DifferentialExpressionAnalysisResult>

Unlike DiffExResultSetSummaryValueObject, this value object is meant for the public API.

See Also:

• Serialized Form

Field Summary

Fields inherited from class IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionAnalysisResultValueObject()
DifferentialExpressionAnalysisResultValueObject(DifferentialExpressionAnalysisResult result, boolean includeFactorValues)
DifferentialExpressionAnalysisResultValueObject(DifferentialExpressionAnalysisResult result, boolean includeFactorValuesInContrasts, Set<Gene> genes, boolean includeTaxonInGenes)

Method Summary

Modifier and Type	Method	Description
protected boolean	canEqual(Object other)
boolean	equals(Object o)
List<ContrastResultValueObject>	getContrasts()
Double	getCorrectedPvalue()	Rounded on the way out, as pValue is.
List<GeneValueObject>	getGenes()
Long	getProbeId()
String	getProbeName()
Double	getPValue()	Rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out.
Double	getRank()
Long	getResultSetId()
int	hashCode()
void	setContrasts(List<ContrastResultValueObject> contrasts)
void	setCorrectedPvalue(Double correctedPvalue)	Rounded on the way out, as pValue is.
void	setGenes(List<GeneValueObject> genes)
void	setProbeId(Long probeId)
void	setProbeName(String probeName)
void	setPValue(Double pValue)	Rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out.
void	setRank(Double rank)
void	setResultSetId(Long resultSetId)
String	toString()

Methods inherited from class IdentifiableValueObject

getId, setId

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

DifferentialExpressionAnalysisResultValueObject

public DifferentialExpressionAnalysisResultValueObject()

DifferentialExpressionAnalysisResultValueObject

public DifferentialExpressionAnalysisResultValueObject(DifferentialExpressionAnalysisResult result,
 boolean includeFactorValues)

DifferentialExpressionAnalysisResultValueObject

public DifferentialExpressionAnalysisResultValueObject(DifferentialExpressionAnalysisResult result,
 boolean includeFactorValuesInContrasts,
 Set<Gene> genes,
 boolean includeTaxonInGenes)

Method Details

getResultSetId

public Long getResultSetId()

getProbeId

public Long getProbeId()

getProbeName

public String getProbeName()

getGenes

public List<GeneValueObject> getGenes()

getPValue

@Nullable
public Double getPValue()

Rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out. Significant digits rather than decimal places because a p-value of 1e-300 has to survive.

Rounding happens at serialization, not in the constructor: getDatasetsDifferentialExpression ranks rows by corrected p-value, and rounding before that sort can reorder near-ties.

getCorrectedPvalue

@Nullable
public Double getCorrectedPvalue()

Rounded on the way out, as pValue is.

getRank

@Nullable
public Double getRank()

getContrasts

public List<ContrastResultValueObject> getContrasts()

setResultSetId

public void setResultSetId(Long resultSetId)

setProbeId

public void setProbeId(Long probeId)

setProbeName

public void setProbeName(String probeName)

setGenes

public void setGenes(List<GeneValueObject> genes)

setPValue

public void setPValue(@Nullable
 Double pValue)

Rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out. Significant digits rather than decimal places because a p-value of 1e-300 has to survive.

Rounding happens at serialization, not in the constructor: getDatasetsDifferentialExpression ranks rows by corrected p-value, and rounding before that sort can reorder near-ties.

setCorrectedPvalue

public void setCorrectedPvalue(@Nullable
 Double correctedPvalue)

Rounded on the way out, as pValue is.

setRank

public void setRank(@Nullable
 Double rank)

setContrasts

public void setContrasts(List<ContrastResultValueObject> contrasts)

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<DifferentialExpressionAnalysisResult>

equals

public boolean equals(Object o)

Overrides:

equals in class IdentifiableValueObject<DifferentialExpressionAnalysisResult>

canEqual

protected boolean canEqual(Object other)

Overrides:

canEqual in class IdentifiableValueObject<DifferentialExpressionAnalysisResult>

hashCode

public int hashCode()

Overrides:

hashCode in class IdentifiableValueObject<DifferentialExpressionAnalysisResult>