Package ubic.gemma.model.analysis.expression.diff

Class DiffExResultSetSummaryValueObject

java.lang.Object
ubic.gemma.model.analysis.expression.diff.DiffExResultSetSummaryValueObject
All Implemented Interfaces:
Serializable
public class DiffExResultSetSummaryValueObject extends Object implements Serializable
Summary of a result set.
Author:
paul
See Also:

  • Constructor Details

    • DiffExResultSetSummaryValueObject

      public DiffExResultSetSummaryValueObject()

    • DiffExResultSetSummaryValueObject

      public DiffExResultSetSummaryValueObject(ExpressionAnalysisResultSet resultSet)

  • Method Details

    • getUpregulatedCount

      @Deprecated public Integer getUpregulatedCount()
      Deprecated.
      use getNumberOfUpregulatedProbes() instead.

    • getNumberOfUpregulatedProbes

      public Integer getNumberOfUpregulatedProbes()

    • getDownregulatedCount

      @Deprecated public Integer getDownregulatedCount()
      Deprecated.
      use getNumberOfDownregulatedProbes() instead.

    • getNumberOfDownregulatedProbes

      public Integer getNumberOfDownregulatedProbes()

    • getResultSetId

      public Long getResultSetId()
      Alias for getId() kept for backward-compatibility in the Gemma Web frontend.

    • getId

      public Long getId()

    • getAnalysisId

      public Long getAnalysisId()

    • getArrayDesignsUsed

      public Collection<Long> getArrayDesignsUsed()

    • getBaselineGroup

      public FactorValueValueObject getBaselineGroup()

    • getExperimentalFactors

      public Collection<ExperimentalFactorValueObject> getExperimentalFactors()

    • getFactorIds

      public Collection<Long> getFactorIds()

    • getBioAssaySetAnalyzedId

      public Long getBioAssaySetAnalyzedId()
      Analyzed BioAssaySet ID.

      This is redundant because of DifferentialExpressionAnalysisValueObject.getExperimentAnalyzedId(), and always displayed in that context in the RESTful API.

    • getNumberOfGenesAnalyzed

      public Integer getNumberOfGenesAnalyzed()

    • getNumberOfProbesAnalyzed

      public Integer getNumberOfProbesAnalyzed()

    • getQValue

      public Double getQValue()
      This is used once in the frontend, but never filled, so please ignore.

    • getThreshold

      public Double getThreshold()
      Threshold applied to the hitlist.

    • getNumberOfDiffExpressedProbes

      public Integer getNumberOfDiffExpressedProbes()
      Number of diffex probes in the Direction.EITHER hit list if available.

    • setId

      public void setId(Long id)

    • setAnalysisId

      public void setAnalysisId(Long analysisId)

    • setArrayDesignsUsed

      public void setArrayDesignsUsed(Collection<Long> arrayDesignsUsed)

    • setBaselineGroup

      public void setBaselineGroup(FactorValueValueObject baselineGroup)

    • setExperimentalFactors

      public void setExperimentalFactors(Collection<ExperimentalFactorValueObject> experimentalFactors)

    • setFactorIds

      public void setFactorIds(Collection<Long> factorIds)

    • setBioAssaySetAnalyzedId

      public void setBioAssaySetAnalyzedId(Long bioAssaySetAnalyzedId)
      Analyzed BioAssaySet ID.

      This is redundant because of DifferentialExpressionAnalysisValueObject.getExperimentAnalyzedId(), and always displayed in that context in the RESTful API.

    • setNumberOfGenesAnalyzed

      public void setNumberOfGenesAnalyzed(Integer numberOfGenesAnalyzed)

    • setNumberOfProbesAnalyzed

      public void setNumberOfProbesAnalyzed(Integer numberOfProbesAnalyzed)

    • setQValue

      public void setQValue(Double qValue)
      This is used once in the frontend, but never filled, so please ignore.

    • setThreshold

      public void setThreshold(Double threshold)
      Threshold applied to the hitlist.

    • setNumberOfDiffExpressedProbes

      public void setNumberOfDiffExpressedProbes(Integer numberOfDiffExpressedProbes)
      Number of diffex probes in the Direction.EITHER hit list if available.

    • setUpregulatedCount

      public void setUpregulatedCount(Integer upregulatedCount)
      Number of diffex probes in the Direction.UP hit list if available.

    • setDownregulatedCount

      public void setDownregulatedCount(Integer downregulatedCount)
      Number of diffex probes in the Direction.DOWN hit list if available.

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • canEqual

      protected boolean canEqual(Object other)

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object