Package ubic.gemma.model.analysis.expression.coexpression
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Class Summary Class Description CoexpCorrelationDistribution CoexpCorrelationDistribution.Factory CoexpressionAnalysis A coexpression analysis of one experiment.CoexpressionAnalysis.Factory GeneCoexpressedGenes Important: this is slightly misnamed, since it potentially includes links that have support of zero.GeneCoexpressionTestedIn Tracks the datasets in which coexpression for a gene has been tested.HumanCoexpressionSupportDetails IdArray Represents a set of IDs for entities (e.g., genes or experiments), stored in a bitSet.IdArrayValueObject MouseCoexpressionSupportDetails OtherCoexpressionSupportDetails RatCoexpressionSupportDetails SampleCoexpressionAnalysis The 'analysis' in the name is a bit of a stretch here, as this object servers purely as an aggregator of all the sample coexpression matrices.SampleCoexpressionAnalysis.Factory SampleCoexpressionMatrix Holds the data of the sample coexpression matrixSampleCoexpressionMatrix.Factory SupportDetails Represents the datasets in which a link was found in ("supported").