Package ubic.gemma.model.analysis.expression.coexpression

Class CoexpressionAnalysis

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.analysis.Analysis

ubic.gemma.model.analysis.expression.ExpressionAnalysis

ubic.gemma.model.analysis.SingleExperimentAnalysis<ExpressionExperiment>

ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredChild, Securable, SecuredChild, Describable, Identifiable

public class CoexpressionAnalysis
extends SingleExperimentAnalysis<ExpressionExperiment>

A coexpression analysis of one experiment. Note that this is used to store meta-data about the analysis, the actual results are not attached to this.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	CoexpressionAnalysis.Factory

Constructor Summary

Constructors

Constructor	Description
CoexpressionAnalysis()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
CoexpCorrelationDistribution	getCoexpCorrelationDistribution()
Integer	getNumberOfLinks()
void	setCoexpCorrelationDistribution(CoexpCorrelationDistribution coexpCorrelationDistribution)
void	setNumberOfLinks(Integer numberOfLinks)

Methods inherited from class ubic.gemma.model.analysis.SingleExperimentAnalysis

getExperimentAnalyzed, getNumberOfElementsAnalyzed, getSecurityOwner, setExperimentAnalyzed, setNumberOfElementsAnalyzed

Methods inherited from class ubic.gemma.model.analysis.Analysis

getName, getProtocol, setName, setProtocol

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

getDescription, hashCode, setDescription, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Details

CoexpressionAnalysis

public CoexpressionAnalysis()

Method Details

getCoexpCorrelationDistribution

public CoexpCorrelationDistribution getCoexpCorrelationDistribution()

setCoexpCorrelationDistribution

public void setCoexpCorrelationDistribution(CoexpCorrelationDistribution coexpCorrelationDistribution)

getNumberOfLinks

public Integer getNumberOfLinks()

Returns:

The number of links which were stored for this analysis.

setNumberOfLinks

public void setNumberOfLinks(Integer numberOfLinks)

Parameters:

numberOfLinks - at the gene level.

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable