CoexpressionAnalysis (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.model.common.AbstractIdentifiable
- - ubic.gemma.model.common.AbstractDescribable
  - - ubic.gemma.model.analysis.Analysis
    - - ubic.gemma.model.analysis.expression.ExpressionAnalysis
      - ubic.gemma.model.analysis.SingleExperimentAnalysis
        
        ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis

All Implemented Interfaces:

gemma.gsec.model.Securable, gemma.gsec.model.SecuredChild, Securable, SecuredChild, Describable, Identifiable
```
public class CoexpressionAnalysis
extends SingleExperimentAnalysis
```
A coexpression analysis of one experiment. Note that this is used to store meta-data about the analysis, the actual results are not attached to this.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class CoexpressionAnalysis.Factory

Constructor Summary

Constructors
Constructor Description

CoexpressionAnalysis()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object object)`	Important note: Two objects with the same class and non-null ID must be considered equal.
`CoexpCorrelationDistribution`	`getCoexpCorrelationDistribution()`
`Integer`	`getNumberOfLinks()`
`void`	`setCoexpCorrelationDistribution(CoexpCorrelationDistribution coexpCorrelationDistribution)`
`void`	`setNumberOfLinks(Integer numberOfLinks)`

Methods inherited from class ubic.gemma.model.analysis.SingleExperimentAnalysis
getExperimentAnalyzed, getNumberOfElementsAnalyzed, getSecurityOwner, setExperimentAnalyzed, setNumberOfElementsAnalyzed

Methods inherited from class ubic.gemma.model.analysis.Analysis
getProtocol, setProtocol

Methods inherited from class ubic.gemma.model.common.AbstractDescribable
getDescription, getName, hashCode, setDescription, setName, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable
getId, setId

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable
getId

Methods inherited from interface gemma.gsec.model.Securable
getId

- Constructor Detail
  - CoexpressionAnalysis
```
public CoexpressionAnalysis()
```
- Method Detail
  - getCoexpCorrelationDistribution
```
public CoexpCorrelationDistribution getCoexpCorrelationDistribution()
```
  - setCoexpCorrelationDistribution
```
public void setCoexpCorrelationDistribution(CoexpCorrelationDistribution coexpCorrelationDistribution)
```
  - getNumberOfLinks
```
public Integer getNumberOfLinks()
```
    Returns:
    
    The number of links which were stored for this analysis.
  - setNumberOfLinks
```
public void setNumberOfLinks(Integer numberOfLinks)
```
    Parameters:
    
    numberOfLinks - at the gene level.
  - equals
```
public boolean equals(Object object)
```
    Description copied from class: AbstractIdentifiable
    
    Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.
    
    Specified by:
    
    equals in class AbstractIdentifiable