Uses of Package
ubic.gemma.model.analysis.expression.diff
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Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.analysis.expression.diff Class Description DifferentialExpressionAnalysis An analysis of changes in expression levels across experimental conditionsDifferentialExpressionAnalysisResult Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.DifferentialExpressionValueObject Represents the results for one probe.ExpressionAnalysisResultSet A group of results for an ExpressionExperiment.GeneDifferentialExpressionMetaAnalysis Represents an analysis that combines the results of other analyses of differential expression.GeneDifferentialExpressionMetaAnalysisDetailValueObject GeneDifferentialExpressionMetaAnalysisSummaryValueObject HitListSize The number of probes meeting a given q-value threshold in the result set. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.analysis.service Class Description DifferentialExpressionAnalysis An analysis of changes in expression levels across experimental conditionsDifferentialExpressionAnalysisResult Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.ExpressionAnalysisResultSet A group of results for an ExpressionExperiment. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.tasks.analysis.diffex Class Description DifferentialExpressionAnalysis An analysis of changes in expression levels across experimental conditions -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.tasks.visualization Class Description DifferentialExpressionAnalysisValueObject Summary of a differential expression analysisDiffExResultSetSummaryValueObject Summary of a result set. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.analysis.expression.diff Class Description ContrastResult Represents a contrast between "conditions".ContrastsValueObject Stores selected details of the contrasts for a single DifferentialExpressionResultContrastVO Helper object, not for general use.DifferentialExpressionAnalysis An analysis of changes in expression levels across experimental conditionsDifferentialExpressionAnalysisResult Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.DifferentialExpressionAnalysisResultValueObject UnlikeDiffExResultSetSummaryValueObject, this value object is meant for the public API.DifferentialExpressionAnalysisValueObject Summary of a differential expression analysisDirection Represents the direction of a change e.g.ExpressionAnalysisResultSet A group of results for an ExpressionExperiment.GeneDifferentialExpressionMetaAnalysis Represents an analysis that combines the results of other analyses of differential expression.GeneDifferentialExpressionMetaAnalysisResult GeneDifferentialExpressionMetaAnalysisResultValueObject HitListSize The number of probes meeting a given q-value threshold in the result set.IncludedResultSetInfoValueObject PvalueDistribution -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.association.phenotype Class Description GeneDifferentialExpressionMetaAnalysisResult -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.expression.experiment Class Description DifferentialExpressionAnalysisValueObject Summary of a differential expression analysis -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.genome.gene.phenotype.valueObject Class Description GeneDifferentialExpressionMetaAnalysis Represents an analysis that combines the results of other analyses of differential expression.GeneDifferentialExpressionMetaAnalysisResult GeneDifferentialExpressionMetaAnalysisSummaryValueObject -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.persistence.service.analysis.expression.diff Class Description ContrastsValueObject Stores selected details of the contrasts for a single DifferentialExpressionResultDifferentialExpressionAnalysis An analysis of changes in expression levels across experimental conditionsDifferentialExpressionAnalysisResult Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.DifferentialExpressionAnalysisResultSetValueObject Wraps anExpressionAnalysisResultSetand expose it to the public API.DifferentialExpressionAnalysisValueObject Summary of a differential expression analysisDifferentialExpressionValueObject Represents the results for one probe.DiffExprGeneSearchResult Value object for differential expression result for one result - corresponds to the DifferentialExpressionAnalysisResults for one gene in one ResultSet (combined for multiple probes), but represents only the "selected" analysisResult.DiffExResultSetSummaryValueObject Summary of a result set.ExpressionAnalysisResultSet A group of results for an ExpressionExperiment.GeneDifferentialExpressionMetaAnalysis Represents an analysis that combines the results of other analyses of differential expression.GeneDifferentialExpressionMetaAnalysisResult GeneDifferentialExpressionMetaAnalysisResultValueObject GeneDifferentialExpressionMetaAnalysisSummaryValueObject IncludedResultSetInfoValueObject -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.persistence.util Class Description DifferentialExpressionAnalysisResult Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.rest Class Description DifferentialExpressionAnalysisResultSetValueObject Wraps anExpressionAnalysisResultSetand expose it to the public API.DifferentialExpressionAnalysisValueObject Summary of a differential expression analysisExpressionAnalysisResultSet A group of results for an ExpressionExperiment. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.rest.util.args Class Description ExpressionAnalysisResultSet A group of results for an ExpressionExperiment. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.web.controller.diff Class Description DifferentialExpressionValueObject Represents the results for one probe.GeneDifferentialExpressionMetaAnalysisSummaryValueObject