Uses of Package
ubic.gemma.model.analysis.expression.diff
Packages that use ubic.gemma.model.analysis.expression.diff
Package
Description
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.cli.utilClassDescriptionAn analysis of changes in expression levels across experimental conditions
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.analysis.expression.diffClassDescriptionAn analysis of changes in expression levels across experimental conditionsRepresents the results for one probe.A group of results for an ExpressionExperiment.Represents an analysis that combines the results of other analyses of differential expression.
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.analysis.serviceClassDescriptionRepresents a baseline for a single factor or an interaction of factors.An analysis of changes in expression levels across experimental conditionsResult of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.A group of results for an ExpressionExperiment.
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.tasks.analysis.diffexClassDescriptionAn analysis of changes in expression levels across experimental conditions
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.core.tasks.visualizationClassDescriptionSummary of a differential expression analysisSummary of a result set.
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.analysis.expression.diffClassDescriptionRepresents a baseline for a single factor or an interaction of factors.Represents a contrast.Represents a contrast between "conditions".An analysis of changes in expression levels across experimental conditionsResult of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.Unlike
DiffExResultSetSummaryValueObject, this value object is meant for the public API.Summary of a differential expression analysisRepresents the direction of a change e.g. in expression.A group of results for an ExpressionExperiment.Represents an analysis that combines the results of other analyses of differential expression.The number of probes meeting a given q-value threshold in the result set. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.model.expression.experimentClassDescriptionSummary of a differential expression analysis
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.persistence.service.analysis.expression.diffClassDescriptionRepresents a baseline for a single factor or an interaction of factors.Stores selected details of the contrasts for a single DifferentialExpressionResultAn analysis of changes in expression levels across experimental conditionsResult of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.Wraps an
ExpressionAnalysisResultSetand expose it to the public API.Summary of a differential expression analysisRepresents the results for one probe.Value object for differential expression result for one result - corresponds to the DifferentialExpressionAnalysisResults for one gene in one ResultSet (combined for multiple probes), but represents only the "selected" analysisResult.Summary of a result set.A group of results for an ExpressionExperiment.Represents an analysis that combines the results of other analyses of differential expression. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.persistence.utilClassDescriptionResult of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.restClassDescriptionRepresents a baseline for a single factor or an interaction of factors.Result of an analysis of differences in expression levels -- a single test (e.g., for one gene or one probe), for one factor.Wraps an
ExpressionAnalysisResultSetand expose it to the public API.UnlikeDiffExResultSetSummaryValueObject, this value object is meant for the public API.Summary of a differential expression analysisA group of results for an ExpressionExperiment. -
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.rest.util.args
-
Classes in ubic.gemma.model.analysis.expression.diff used by ubic.gemma.web.controller.analysis.expression.diffClassDescriptionRepresents the results for one probe.