Uses of Class
ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisResult
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Uses of DifferentialExpressionAnalysisResult in ubic.gemma.core.analysis.expression.diff
Method parameters in ubic.gemma.core.analysis.expression.diff with type arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description Set<HitListSize>
DiffExAnalyzer. computeHitListSizes(Collection<DifferentialExpressionAnalysisResult> results, Map<CompositeSequence,Collection<Gene>> probeToGeneMap)
Generate HitListSize entities that will be stored to count the number of diff.Set<HitListSize>
LinearModelAnalyzer. computeHitListSizes(Collection<DifferentialExpressionAnalysisResult> results, Map<CompositeSequence,Collection<Gene>> probeToGeneMap)
int
DiffExAnalyzer. getNumberOfGenesTested(Collection<DifferentialExpressionAnalysisResult> resultList, Map<CompositeSequence,Collection<Gene>> probeToGeneMap)
Utility methodint
LinearModelAnalyzer. getNumberOfGenesTested(Collection<DifferentialExpressionAnalysisResult> resultList, Map<CompositeSequence,Collection<Gene>> probeToGeneMap)
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Uses of DifferentialExpressionAnalysisResult in ubic.gemma.core.analysis.service
Methods in ubic.gemma.core.analysis.service that return types with arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description List<DifferentialExpressionAnalysisResult>
ExpressionDataFileService. analysisResultSetToString(ExpressionAnalysisResultSet ears, Map<Long,String[]> geneAnnotations, StringBuilder buf, Map<Long,StringBuilder> probe2String, List<DifferentialExpressionAnalysisResult> sortedFirstColumnOfResults)
List<DifferentialExpressionAnalysisResult>
ExpressionDataFileServiceImpl. analysisResultSetToString(ExpressionAnalysisResultSet ears, Map<Long,String[]> geneAnnotations, StringBuilder buf, Map<Long,StringBuilder> probe2String, List<DifferentialExpressionAnalysisResult> sortedFirstColumnOfResults)
Method parameters in ubic.gemma.core.analysis.service with type arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description List<DifferentialExpressionAnalysisResult>
ExpressionDataFileService. analysisResultSetToString(ExpressionAnalysisResultSet ears, Map<Long,String[]> geneAnnotations, StringBuilder buf, Map<Long,StringBuilder> probe2String, List<DifferentialExpressionAnalysisResult> sortedFirstColumnOfResults)
List<DifferentialExpressionAnalysisResult>
ExpressionDataFileServiceImpl. analysisResultSetToString(ExpressionAnalysisResultSet ears, Map<Long,String[]> geneAnnotations, StringBuilder buf, Map<Long,StringBuilder> probe2String, List<DifferentialExpressionAnalysisResult> sortedFirstColumnOfResults)
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Uses of DifferentialExpressionAnalysisResult in ubic.gemma.model.analysis.expression.diff
Methods in ubic.gemma.model.analysis.expression.diff that return DifferentialExpressionAnalysisResult Modifier and Type Method Description static DifferentialExpressionAnalysisResult
DifferentialExpressionAnalysisResult.Factory. newInstance()
Methods in ubic.gemma.model.analysis.expression.diff that return types with arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description Set<DifferentialExpressionAnalysisResult>
ExpressionAnalysisResultSet. getResults()
Set<DifferentialExpressionAnalysisResult>
GeneDifferentialExpressionMetaAnalysisResult. getResultsUsed()
Method parameters in ubic.gemma.model.analysis.expression.diff with type arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description void
ExpressionAnalysisResultSet. setResults(Set<DifferentialExpressionAnalysisResult> results)
void
GeneDifferentialExpressionMetaAnalysisResult. setResultsUsed(Set<DifferentialExpressionAnalysisResult> resultsUsed)
Constructors in ubic.gemma.model.analysis.expression.diff with parameters of type DifferentialExpressionAnalysisResult Constructor Description DifferentialExpressionAnalysisResultValueObject(DifferentialExpressionAnalysisResult result, List<Gene> genes)
DifferentialExpressionValueObject(DifferentialExpressionAnalysisResult o)
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Uses of DifferentialExpressionAnalysisResult in ubic.gemma.persistence.service.analysis.expression.diff
Methods in ubic.gemma.persistence.service.analysis.expression.diff that return types with arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description Collection<DifferentialExpressionAnalysisResult>
DifferentialExpressionResultDaoImpl. create(Collection<DifferentialExpressionAnalysisResult> entities)
Collection<DifferentialExpressionAnalysisResult>
DifferentialExpressionResultDaoImpl. loadAll()
Methods in ubic.gemma.persistence.service.analysis.expression.diff with parameters of type DifferentialExpressionAnalysisResult Modifier and Type Method Description void
DifferentialExpressionResultDaoImpl. remove(DifferentialExpressionAnalysisResult entity)
Method parameters in ubic.gemma.persistence.service.analysis.expression.diff with type arguments of type DifferentialExpressionAnalysisResult Modifier and Type Method Description Collection<DifferentialExpressionAnalysisResult>
DifferentialExpressionResultDaoImpl. create(Collection<DifferentialExpressionAnalysisResult> entities)
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Uses of DifferentialExpressionAnalysisResult in ubic.gemma.persistence.util
Methods in ubic.gemma.persistence.util with parameters of type DifferentialExpressionAnalysisResult Modifier and Type Method Description int
DifferentialExpressionAnalysisResultComparator. compare(DifferentialExpressionAnalysisResult ear1, DifferentialExpressionAnalysisResult ear2)
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