Package ubic.gemma.core.analysis.service

Interface DifferentialExpressionAnalysisResultListFileService

All Known Implementing Classes:

DifferentialExpressionAnalysisResultListFileServiceImpl

public interface DifferentialExpressionAnalysisResultListFileService

File service for arbitrary list of DifferentialExpressionAnalysisResult.

Use DifferentialExpressionAnalysisResultListFileService for producing results from a single result set.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
void	writeTsv(List<DifferentialExpressionAnalysisResult> payload, Gene gene, Map<DifferentialExpressionAnalysisResult,Long> sourceExperimentIdMap, Map<DifferentialExpressionAnalysisResult,Long> experimentAnalyzedIdMap, Map<DifferentialExpressionAnalysisResult,Baseline> baselineMap, Writer writer)	Writes a list of DE results with additional columns for mapping them to source experiments and analyzed experiments (for subsets).

Method Details

writeTsv

void writeTsv(List<DifferentialExpressionAnalysisResult> payload,
 @Nullable
 Gene gene,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Long> sourceExperimentIdMap,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Long> experimentAnalyzedIdMap,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Baseline> baselineMap,
 Writer writer)
       throws IOException

Writes a list of DE results with additional columns for mapping them to source experiments and analyzed experiments (for subsets).

The following additional columns are added: - source experiment ID - experiment analyzed ID

Throws:

IOException