Package ubic.gemma.core.analysis.service

Class DifferentialExpressionAnalysisResultListFileServiceImpl

java.lang.Object

ubic.gemma.core.analysis.service.DifferentialExpressionAnalysisResultListFileServiceImpl

All Implemented Interfaces:

DifferentialExpressionAnalysisResultListFileService

@Service
public class DifferentialExpressionAnalysisResultListFileServiceImpl
extends Object
implements DifferentialExpressionAnalysisResultListFileService

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionAnalysisResultListFileServiceImpl()

Method Summary

Modifier and Type	Method	Description
void	writeTsv(List<DifferentialExpressionAnalysisResult> entity, Gene gene, Map<DifferentialExpressionAnalysisResult,Long> sourceExperimentIdMap, Map<DifferentialExpressionAnalysisResult,Long> experimentAnalyzedIdMap, Map<DifferentialExpressionAnalysisResult,Baseline> baselineMap, Writer writer)	Writes a list of DE results with additional columns for mapping them to source experiments and analyzed experiments (for subsets).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DifferentialExpressionAnalysisResultListFileServiceImpl

public DifferentialExpressionAnalysisResultListFileServiceImpl()

Method Details

writeTsv

public void writeTsv(List<DifferentialExpressionAnalysisResult> entity,
 @Nullable
 Gene gene,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Long> sourceExperimentIdMap,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Long> experimentAnalyzedIdMap,
 @Nullable
 Map<DifferentialExpressionAnalysisResult,Baseline> baselineMap,
 Writer writer)
              throws IOException

Description copied from interface: DifferentialExpressionAnalysisResultListFileService

Writes a list of DE results with additional columns for mapping them to source experiments and analyzed experiments (for subsets).

The following additional columns are added: - source experiment ID - experiment analyzed ID

Specified by:

writeTsv in interface DifferentialExpressionAnalysisResultListFileService

Throws:

IOException