Package ubic.gemma.model.analysis.expression.diff

Class GeneDifferentialExpressionMetaAnalysisResult

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.analysis.expression.diff.GeneDifferentialExpressionMetaAnalysisResult
All Implemented Interfaces:
Identifiable
public class GeneDifferentialExpressionMetaAnalysisResult extends AbstractIdentifiable

  • Constructor Details

    • GeneDifferentialExpressionMetaAnalysisResult

      public GeneDifferentialExpressionMetaAnalysisResult()

  • Method Details

    • getGene

      public Gene getGene()

    • setGene

      public void setGene(Gene gene)

    • getMeanLogFoldChange

      public Double getMeanLogFoldChange()
      Returns:
      Note that this value could be misleading; it is possible for the fold change to be positive but the meta-analysis is for down-regulation. Use 'upperTail' to see which direction was inspected.

    • setMeanLogFoldChange

      public void setMeanLogFoldChange(Double meanLogFoldChange)

    • getMetaPvalue

      public Double getMetaPvalue()

    • setMetaPvalue

      public void setMetaPvalue(Double metaPvalue)

    • getMetaPvalueRank

      public Double getMetaPvalueRank()
      Returns:
      The rank of the gene in the full set of results.

    • setMetaPvalueRank

      public void setMetaPvalueRank(Double metaPvalueRank)

    • getMetaQvalue

      public Double getMetaQvalue()

    • setMetaQvalue

      public void setMetaQvalue(Double metaQvalue)

    • getResultsUsed

      public Set<DifferentialExpressionAnalysisResult> getResultsUsed()
      Returns:
      The underlying differential expression results that contributed to the meta-analysis result.

    • setResultsUsed

      public void setResultsUsed(Set<DifferentialExpressionAnalysisResult> resultsUsed)

    • getUpperTail

      public Boolean getUpperTail()
      Returns:
      If true, indicates the fold change "looked for" was positive (i.e., pvalue measured using the upper tail of the t distribution; the alternative hypothesis is fold change > 0)

    • setUpperTail

      public void setUpperTail(Boolean upperTail)

    • hashCode

      public int hashCode()
      Description copied from class: AbstractIdentifiable
      Important note: Never use the ID in the hashCode() implementation since it can be assigned when the object is persisted.
      Specified by:
      hashCode in class AbstractIdentifiable
      Returns:
      a hash code based on this entity's identifiers.

    • equals

      public boolean equals(Object object)
      Returns true if the argument is an GeneDifferentialExpressionMetaAnalysisResult instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.
      Specified by:
      equals in class AbstractIdentifiable