void |
DifferentialExpressionResultCache.addToTopHitsCache(ExpressionAnalysisResultSet resultSet,
List<DifferentialExpressionValueObject> items) |
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void |
DifferentialExpressionResultCacheImpl.addToTopHitsCache(ExpressionAnalysisResultSet resultSet,
List<DifferentialExpressionValueObject> items) |
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Integer |
DifferentialExpressionAnalysisDao.countDownregulated(ExpressionAnalysisResultSet par,
double threshold) |
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Integer |
DifferentialExpressionAnalysisService.countDownregulated(ExpressionAnalysisResultSet par,
double threshold) |
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Integer |
DifferentialExpressionAnalysisServiceImpl.countDownregulated(ExpressionAnalysisResultSet par,
double threshold) |
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Integer |
DifferentialExpressionAnalysisDao.countProbesMeetingThreshold(ExpressionAnalysisResultSet ears,
double threshold) |
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Integer |
DifferentialExpressionAnalysisService.countProbesMeetingThreshold(ExpressionAnalysisResultSet ears,
double threshold) |
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Integer |
DifferentialExpressionAnalysisServiceImpl.countProbesMeetingThreshold(ExpressionAnalysisResultSet ears,
double threshold) |
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Integer |
DifferentialExpressionAnalysisDao.countUpregulated(ExpressionAnalysisResultSet par,
double threshold) |
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Integer |
DifferentialExpressionAnalysisService.countUpregulated(ExpressionAnalysisResultSet par,
double threshold) |
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Integer |
DifferentialExpressionAnalysisServiceImpl.countUpregulated(ExpressionAnalysisResultSet par,
double threshold) |
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ExpressionAnalysisResultSet |
ExpressionAnalysisResultSetDaoImpl.create(ExpressionAnalysisResultSet entity) |
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protected DifferentialExpressionAnalysisResultSetValueObject |
ExpressionAnalysisResultSetDaoImpl.doLoadValueObject(ExpressionAnalysisResultSet entity) |
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Collection<DifferentialExpressionAnalysis> |
DifferentialExpressionAnalysisDao.find(Gene gene,
ExpressionAnalysisResultSet resultSet,
double threshold) |
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Collection<DifferentialExpressionAnalysis> |
DifferentialExpressionAnalysisService.find(Gene gene,
ExpressionAnalysisResultSet resultSet,
double threshold) |
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Collection<DifferentialExpressionAnalysis> |
DifferentialExpressionAnalysisServiceImpl.find(Gene gene,
ExpressionAnalysisResultSet resultSet,
double threshold) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultDao.findInResultSet(ExpressionAnalysisResultSet resultSet,
Double threshold,
int maxResultsToReturn,
int minNumberOfResults) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultDaoImpl.findInResultSet(ExpressionAnalysisResultSet resultSet,
Double threshold,
int limit,
int minNumberOfResults) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultService.findInResultSet(ExpressionAnalysisResultSet ar,
Double threshold,
int maxResultsToReturn,
int minNumberOfResults) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultServiceImpl.findInResultSet(ExpressionAnalysisResultSet resultSet,
Double threshold,
int maxResultsToReturn,
int minNumberOfResults) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultCache.getTopHits(ExpressionAnalysisResultSet resultSet) |
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List<DifferentialExpressionValueObject> |
DifferentialExpressionResultCacheImpl.getTopHits(ExpressionAnalysisResultSet resultSet) |
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Map<Long,List<Gene>> |
ExpressionAnalysisResultSetService.loadResultIdToGenesMap(ExpressionAnalysisResultSet ears) |
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Map<Long,List<Gene>> |
ExpressionAnalysisResultSetServiceImpl.loadResultIdToGenesMap(ExpressionAnalysisResultSet resultSet) |
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Map<Long,List<Gene>> |
ExpressionAnalysisResultSetDao.loadResultToGenesMap(ExpressionAnalysisResultSet resultSet) |
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Map<Long,List<Gene>> |
ExpressionAnalysisResultSetDaoImpl.loadResultToGenesMap(ExpressionAnalysisResultSet resultSet) |
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DifferentialExpressionAnalysisResultSetValueObject |
ExpressionAnalysisResultSetDao.loadValueObjectWithResults(ExpressionAnalysisResultSet resultSet) |
Load an analysis result set with its all of its associated results.
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DifferentialExpressionAnalysisResultSetValueObject |
ExpressionAnalysisResultSetDaoImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet entity) |
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DifferentialExpressionAnalysisResultSetValueObject |
ExpressionAnalysisResultSetService.loadValueObjectWithResults(ExpressionAnalysisResultSet ears) |
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DifferentialExpressionAnalysisResultSetValueObject |
ExpressionAnalysisResultSetServiceImpl.loadValueObjectWithResults(ExpressionAnalysisResultSet ears) |
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void |
ExpressionAnalysisResultSetDaoImpl.remove(ExpressionAnalysisResultSet entity) |
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void |
ExpressionAnalysisResultSetDao.thaw(ExpressionAnalysisResultSet ears) |
Initialize the analysis and subset factor vale.
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void |
ExpressionAnalysisResultSetDaoImpl.thaw(ExpressionAnalysisResultSet ears) |
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ExpressionAnalysisResultSet |
ExpressionAnalysisResultSetService.thaw(ExpressionAnalysisResultSet e) |
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ExpressionAnalysisResultSet |
ExpressionAnalysisResultSetServiceImpl.thaw(ExpressionAnalysisResultSet ears) |
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