Package ubic.gemma.persistence.service.analysis.expression.diff

Interface DifferentialExpressionResultCache

All Known Implementing Classes:

DifferentialExpressionResultCacheImpl

public interface DifferentialExpressionResultCache

Cache for differential expression results. This actually manages two caches; one is for resultset x gene results, requested for the (typically) main visualization and meta-analysis. The second is of the "top hits" for a resultset.

Author:

paul

Method Summary

Modifier and Type	Method	Description
void	addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)
void	addToCache(DiffExprGeneSearchResult diffExForCache)
void	addToTopHitsCache(ExpressionAnalysisResultSet resultSet, List<DifferentialExpressionValueObject> items)
void	clearCache()
void	clearCache(Long resultSetId)	Remove all elements from the cache for the given result set, if the cache exists.
void	clearTopHitCache(Long resultSetId)	Remove all elements from the top hits cache for the given result set, if the cache exists.
DiffExprGeneSearchResult	get(Long resultSet, Long g)
Collection<DiffExprGeneSearchResult>	get(Long resultSet, Collection<Long> genes)
List<DifferentialExpressionValueObject>	getTopHits(ExpressionAnalysisResultSet resultSet)
Boolean	isEnabled()
void	setEnabled(Boolean enabled)

Method Details

addToCache

void addToCache(DiffExprGeneSearchResult diffExForCache)

addToCache

void addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)

clearCache

void clearCache()

clearCache

void clearCache(Long resultSetId)

Remove all elements from the cache for the given result set, if the cache exists.

Parameters:

resultSetId - - specific cache to be cleared.

clearTopHitCache

void clearTopHitCache(Long resultSetId)

Remove all elements from the top hits cache for the given result set, if the cache exists.

Parameters:

resultSetId - id

get

Collection<DiffExprGeneSearchResult> get(Long resultSet,
 Collection<Long> genes)

get

DiffExprGeneSearchResult get(Long resultSet,
 Long g)

isEnabled

Boolean isEnabled()

setEnabled

void setEnabled(Boolean enabled)

addToTopHitsCache

void addToTopHitsCache(ExpressionAnalysisResultSet resultSet,
 List<DifferentialExpressionValueObject> items)

getTopHits

List<DifferentialExpressionValueObject> getTopHits(ExpressionAnalysisResultSet resultSet)

Parameters:

resultSet - result set

Returns:

top hits, or null.