Class ExpressionAnalysisResultSetArgService

java.lang.Object

ubic.gemma.rest.util.args.AbstractEntityArgService<ExpressionAnalysisResultSet, ExpressionAnalysisResultSetService>

ubic.gemma.rest.util.args.ExpressionAnalysisResultSetArgService

All Implemented Interfaces:

EntityArgService<ExpressionAnalysisResultSet, ExpressionAnalysisResultSetService>

@Service
public class ExpressionAnalysisResultSetArgService
extends AbstractEntityArgService<ExpressionAnalysisResultSet, ExpressionAnalysisResultSetService>

Field Summary

Fields inherited from class AbstractEntityArgService

service

Constructor Summary

Constructors

Constructor	Description
ExpressionAnalysisResultSetArgService(ExpressionAnalysisResultSetService service)

Method Summary

Modifier and Type	Method	Description
ExpressionAnalysisResultSet	getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet)
ExpressionAnalysisResultSet	getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet, double threshold, int offset, int limit)
ExpressionAnalysisResultSet	getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet, int offset, int limit)
CursorPage<DifferentialExpressionAnalysisResultSetValueObject>	getResultSetsByCursor(Collection<BioAssaySet> bioAssaySets, Collection<DatabaseEntry> databaseEntries, Filters filters, Cursor cursor, int limit)	Cursor-mode counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort).

Methods inherited from class AbstractEntityArgService

checkEntity, entityArgValueOf, getArgsByPropertyName, getElementClass, getEntities, getEntities, getEntity, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getFilters, getFilters, getFilters, getSort, isFilterablePropertyDeprecated, isFilterablePropertyUsingSubquery

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionAnalysisResultSetArgService

@Autowired
public ExpressionAnalysisResultSetArgService(ExpressionAnalysisResultSetService service)

Method Details

getEntityWithContrastsAndResults

public ExpressionAnalysisResultSet getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet)

getEntityWithContrastsAndResults

public ExpressionAnalysisResultSet getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet,
 int offset,
 int limit)

getEntityWithContrastsAndResults

public ExpressionAnalysisResultSet getEntityWithContrastsAndResults(ExpressionAnalysisResultSetArg analysisResultSet,
 double threshold,
 int offset,
 int limit)

getResultSetsByCursor

public CursorPage<DifferentialExpressionAnalysisResultSetValueObject> getResultSetsByCursor(@Nullable
 Collection<BioAssaySet> bioAssaySets,
 @Nullable
 Collection<DatabaseEntry> databaseEntries,
 @Nullable
 Filters filters,
 @Nullable
 Cursor cursor,
 int limit)

Cursor-mode counterpart to ExpressionAnalysisResultSetService.findByBioAssaySetInAndDatabaseEntryInLimit(Collection, Collection, Filters, int, int, Sort). Always sorts by ascending id (the primary key, indexed and unique) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1i. The user's ?filter= arg still applies; the user's ?sort= arg is intentionally not honoured in cursor mode because the DAO currently restricts cursors to single-component id-asc sorts (recce sec. 3.4 — to be lifted in phase B once the index audit is complete).