| AbstractArg<T> |
Base class for non Object-specific functionality argument types, that can be malformed on input (E.g an argument
representing a number was a non-numeric string in the request).
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| AbstractArrayArg<T> |
Class representing an API argument that should be an array.
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| AbstractEntityArg<T,O extends Identifiable,S extends FilteringService<O>> |
Interface representing and API call argument that can represent various identifiers of different types.
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| AbstractEntityArgService<T extends Identifiable,S extends FilteringService<T>> |
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| AbstractEntityArrayArg<O extends Identifiable,S extends FilteringService<O>> |
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| CompositeSequenceArg<T> |
Mutable argument type base class for Composite Sequence arguments.
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| CompositeSequenceArgService |
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| CompositeSequenceArrayArg |
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| CompositeSequenceIdArg |
Composite Sequence argument for CS ID.
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| CompositeSequenceNameArg |
Composite Sequence argument for CS name.
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| DatabaseEntryArg<T> |
Mutable argument type base class for DatabaseEntry API.
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| DatabaseEntryArgService |
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| DatabaseEntryArrayArg |
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| DatabaseEntryIdArg |
Long argument type for DatabaseEntry API, referencing the Taxon ID.
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| DatabaseEntryStringArg |
String argument type for DatabaseEntry API, Can also be null.
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| DatasetArg<T> |
Mutable argument type base class for dataset (ExpressionExperiment) API.
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| DatasetArgService |
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| DatasetArrayArg |
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| DatasetIdArg |
Long argument type for dataset API, referencing the Dataset ID.
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| DatasetStringArg |
String argument type for dataset API, referencing the Dataset short name.
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| ExcludeArg<T> |
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| ExpLevelConsolidationArg |
Class representing an API argument that should be one of the expression level consolidation options.
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| ExpressionAnalysisResultSetArg |
Represents an expression analysis result set identifier.
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| ExpressionAnalysisResultSetArgService |
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| FactorValueArg<A> |
Represents an API arguments that maps to a FactorValue by its ID or name. |
| FactorValueArrayArg |
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| FactorValueIdArg |
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| FactorValueValueArg |
Deprecated. |
| FilterArg<O extends Identifiable> |
Represent a filter argument designed to generate a Filters from user input. |
| FilterArg.Filter |
Represents the internal value of a FilterArg. |
| FilterArgBaseListener |
This class provides an empty implementation of FilterArgListener,
which can be extended to create a listener which only needs to handle a subset
of the available methods. |
| FilterArgLexer |
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| FilterArgParser |
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| FilterArgParser.ClauseContext |
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| FilterArgParser.CollectionContext |
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| FilterArgParser.CollectionOperatorContext |
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| FilterArgParser.DisjunctionContext |
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| FilterArgParser.FilterContext |
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| FilterArgParser.OperatorContext |
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| FilterArgParser.ScalarContext |
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| FilterArgParser.SubClauseContext |
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| GeneAnyIdArg<T> |
Base class for GeneArg representing any of the identifiers of a Gene.
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| GeneArg<T> |
Mutable argument type base class for Gene API.
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| GeneArgService |
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| GeneArrayArg |
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| GeneEnsemblIdArg |
Long argument type for Gene API, referencing the Gene Ensembl ID.
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| GeneNcbiIdArg |
Long argument type for Gene API, referencing the Gene NCBI ID.
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| GeneSymbolArg |
String argument type for Gene API.
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| LimitArg |
Argument used to represent a limit.
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| OffsetArg |
Argument used to represent an offset.
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| PlatformArg<T> |
Mutable argument type base class for dataset (ExpressionExperiment) API.
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| PlatformArgService |
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| PlatformArrayArg |
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| PlatformIdArg |
Long argument type for platform API, referencing the platform ID.
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| PlatformStringArg |
String argument type for platform API, referencing the Platform short name.
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| QuantitationTypeArg<T> |
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| QuantitationTypeArgService |
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| QuantitationTypeByIdArg |
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| QuantitationTypeByNameArg |
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| QueryArg |
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| SortArg<O extends Identifiable> |
Class representing an API argument that should be an integer.
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| SortArg.Sort |
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| StringArrayArg |
Class representing an API argument that should be an array of Strings.
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| TaxonArg<T> |
Mutable argument type base class for Taxon API
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| TaxonArgService |
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| TaxonArrayArg |
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| TaxonIdArg |
Long argument type for taxon API, referencing the Taxon ID.
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| TaxonNameArg |
String argument type for taxon API, referencing the Taxon scientific name or common name.
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| TaxonNcbiIdArg |
Long argument type for taxon API, referencing the Taxon ID.
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