Class CompositeSequenceArgService

java.lang.Object

ubic.gemma.rest.util.args.AbstractEntityArgService<CompositeSequence, CompositeSequenceService>

ubic.gemma.rest.util.args.CompositeSequenceArgService

All Implemented Interfaces:

EntityArgService<CompositeSequence, CompositeSequenceService>

@Service
public class CompositeSequenceArgService
extends AbstractEntityArgService<CompositeSequence, CompositeSequenceService>

Field Summary

Fields inherited from class AbstractEntityArgService

service

Constructor Summary

Constructors

Constructor	Description
CompositeSequenceArgService(CompositeSequenceService service)

Method Summary

Modifier and Type	Method	Description
CompositeSequence	getEntityWithPlatform(CompositeSequenceArg<?> probeArg, ArrayDesign platform)
CursorPage<Gene>	getGenesByCursor(CompositeSequenceArg<?> probeArg, ArrayDesign platform, Cursor cursor, int limit)	Cursor-mode counterpart to CompositeSequenceService.getGenes(CompositeSequence, int, int, boolean) scoped to a single probe on a single platform (the /{platform}/elements/{probe}/genes endpoint) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1l.

Methods inherited from class AbstractEntityArgService

checkEntity, entityArgValueOf, getArgsByPropertyName, getElementClass, getEntities, getEntities, getEntity, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getFilters, getFilters, getFilters, getSort, isFilterablePropertyDeprecated, isFilterablePropertyUsingSubquery

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CompositeSequenceArgService

@Autowired
public CompositeSequenceArgService(CompositeSequenceService service)

Method Details

getEntityWithPlatform

public CompositeSequence getEntityWithPlatform(CompositeSequenceArg<?> probeArg,
 ArrayDesign platform)

getGenesByCursor

public CursorPage<Gene> getGenesByCursor(CompositeSequenceArg<?> probeArg,
 ArrayDesign platform,
 @Nullable
 Cursor cursor,
 int limit)

Cursor-mode counterpart to CompositeSequenceService.getGenes(CompositeSequence, int, int, boolean) scoped to a single probe on a single platform (the /{platform}/elements/{probe}/genes endpoint) — see CURSOR_PAGINATION_STEP1_PLAN.md step 1l. Always sorted by ascending gene.id (the primary key, indexed and unique) because the cursor DAO currently restricts cursors to single-component id sorts (recce sec. 3.4 — to be lifted in phase B once the index audit is complete).

Resolves the probe against the platform (mirroring the offset-mode call probeArgService.getEntityWithPlatform(probeArg, platform) in PlatformsWebService.getPlatformElementGenes) before delegating to the service. useGene2Cs is held at true to match the offset variant.