Package ubic.gemma.core.analysis.service

Class ExpressionAnalysisResultSetFileServiceImpl

java.lang.Object

ubic.gemma.core.analysis.service.AbstractFileService<ExpressionAnalysisResultSet>

ubic.gemma.core.analysis.service.ExpressionAnalysisResultSetFileServiceImpl

All Implemented Interfaces:

ExpressionAnalysisResultSetFileService, FileService<ExpressionAnalysisResultSet>, JsonFileService<ExpressionAnalysisResultSet>, TsvFileService<ExpressionAnalysisResultSet>

@Service
public class ExpressionAnalysisResultSetFileServiceImpl
extends AbstractFileService<ExpressionAnalysisResultSet>
implements ExpressionAnalysisResultSetFileService

Constructor Summary

Constructors

Constructor	Description
ExpressionAnalysisResultSetFileServiceImpl()

Method Summary

Modifier and Type	Method	Description
void	writeTsv(ExpressionAnalysisResultSet entity, Writer writer)	Write the given entity to tabular format.
void	writeTsvToAppendable(ExpressionAnalysisResultSet analysisResultSet, Map<Long,List<Gene>> resultId2Genes, Writer appendable)	Write the analysis result set to an Appendable using a tabular format.

Methods inherited from class ubic.gemma.core.analysis.service.AbstractFileService

escapeTsv, format, getSubDelimiter, getTsvFormatBuilder, write, write, writeJson, writeJson, writeTsv

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.core.analysis.service.FileService

write, write

Methods inherited from interface ubic.gemma.core.analysis.service.TsvFileService

writeTsv

Constructor Detail

ExpressionAnalysisResultSetFileServiceImpl

public ExpressionAnalysisResultSetFileServiceImpl()

Method Detail

writeTsvToAppendable

public void writeTsvToAppendable(ExpressionAnalysisResultSet analysisResultSet,
                                 Map<Long,List<Gene>> resultId2Genes,
                                 Writer appendable)
                          throws IOException

Description copied from interface: ExpressionAnalysisResultSetFileService

Write the analysis result set to an Appendable using a tabular format. The format is borrowed from ExpressionDataFileService and contains the following columns: - result id - probe id - probe name - biological sequence name - pvalue - corrected pvalue (a.k.a. qvalue) - rank

Specified by:

writeTsvToAppendable in interface ExpressionAnalysisResultSetFileService

Throws:

IOException

writeTsv

public void writeTsv(ExpressionAnalysisResultSet entity,
                     Writer writer)
              throws IOException

Description copied from interface: TsvFileService

Write the given entity to tabular format.

Specified by:

writeTsv in interface TsvFileService<ExpressionAnalysisResultSet>

Throws:

IOException