Package ubic.gemma.core.analysis.service

Class ExpressionAnalysisResultSetFileServiceImpl

java.lang.Object

ubic.gemma.core.analysis.service.ExpressionAnalysisResultSetFileServiceImpl

All Implemented Interfaces:

ExpressionAnalysisResultSetFileService

@Service
public class ExpressionAnalysisResultSetFileServiceImpl
extends Object
implements ExpressionAnalysisResultSetFileService

Constructor Summary

Constructors

Constructor	Description
ExpressionAnalysisResultSetFileServiceImpl()

Method Summary

Modifier and Type	Method	Description
void	writeTsv(ExpressionAnalysisResultSet analysisResultSet, Baseline baseline, Map<Long,Set<Gene>> resultId2Genes, Writer writer)	Write the analysis result set with result-to-gene mappings.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionAnalysisResultSetFileServiceImpl

public ExpressionAnalysisResultSetFileServiceImpl()

Method Details

writeTsv

public void writeTsv(ExpressionAnalysisResultSet analysisResultSet,
 @Nullable
 Baseline baseline,
 @Nullable
 Map<Long,Set<Gene>> resultId2Genes,
 Writer writer)
              throws IOException

Description copied from interface: ExpressionAnalysisResultSetFileService

Write the analysis result set with result-to-gene mappings.

The tabular format has the following additional columns: - gene id - gene name - gene NCBI ID - gene official symbol - gene official name

Specified by:

writeTsv in interface ExpressionAnalysisResultSetFileService

Parameters:

baseline - baseline to include in the TSV header

resultId2Genes - mapping of results to genes

Throws:

IOException