Package ubic.gemma.model.analysis.expression.diff

Class GeneDifferentialExpressionMetaAnalysis

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.analysis.Analysis

ubic.gemma.model.analysis.expression.ExpressionAnalysis

ubic.gemma.model.analysis.expression.diff.GeneDifferentialExpressionMetaAnalysis

All Implemented Interfaces:

gemma.gsec.model.Securable, Securable, Describable, Identifiable

public class GeneDifferentialExpressionMetaAnalysis
extends ExpressionAnalysis
implements Securable

Represents an analysis that combines the results of other analyses of differential expression.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	GeneDifferentialExpressionMetaAnalysis.Factory

Constructor Summary

Constructors

Constructor	Description
GeneDifferentialExpressionMetaAnalysis()

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)	Important note: Two objects with the same class and non-null ID must be considered equal.
Integer	getNumGenesAnalyzed()
Double	getQvalueThresholdForStorage()
Set<GeneDifferentialExpressionMetaAnalysisResult>	getResults()
Set<ExpressionAnalysisResultSet>	getResultSetsIncluded()
void	setNumGenesAnalyzed(Integer numGenesAnalyzed)
void	setQvalueThresholdForStorage(Double qvalueThresholdForStorage)
void	setResults(Set<GeneDifferentialExpressionMetaAnalysisResult> results)
void	setResultSetsIncluded(Set<ExpressionAnalysisResultSet> resultSetsIncluded)

Methods inherited from class ubic.gemma.model.analysis.Analysis

getProtocol, setProtocol

Methods inherited from class ubic.gemma.model.common.AbstractDescribable

getDescription, getName, hashCode, setDescription, setName, toString

Methods inherited from class ubic.gemma.model.common.AbstractIdentifiable

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.Identifiable

getId

Methods inherited from interface gemma.gsec.model.Securable

getId

Constructor Detail

GeneDifferentialExpressionMetaAnalysis

public GeneDifferentialExpressionMetaAnalysis()

Method Detail

getNumGenesAnalyzed

public Integer getNumGenesAnalyzed()

Returns:

How many genes were included in the meta-analysis. This does not mean that all genes were analyzed in all the experiments.

setNumGenesAnalyzed

public void setNumGenesAnalyzed(Integer numGenesAnalyzed)

getQvalueThresholdForStorage

public Double getQvalueThresholdForStorage()

Returns:

The threshold, if any, used to determine which of the metaAnalysis results are persisted to the system.

setQvalueThresholdForStorage

public void setQvalueThresholdForStorage(Double qvalueThresholdForStorage)

getResults

public Set<GeneDifferentialExpressionMetaAnalysisResult> getResults()

setResults

public void setResults(Set<GeneDifferentialExpressionMetaAnalysisResult> results)

getResultSetsIncluded

public Set<ExpressionAnalysisResultSet> getResultSetsIncluded()

setResultSetsIncluded

public void setResultSetsIncluded(Set<ExpressionAnalysisResultSet> resultSetsIncluded)

equals

public boolean equals(Object object)

Description copied from class: AbstractIdentifiable

Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

Specified by:

equals in class AbstractIdentifiable