Class GeneDifferentialExpressionMetaAnalysis

java.lang.Object
ubic.gemma.model.common.AbstractIdentifiable
ubic.gemma.model.common.AbstractDescribable
ubic.gemma.model.analysis.Analysis
ubic.gemma.model.analysis.expression.ExpressionAnalysis
ubic.gemma.model.analysis.expression.diff.GeneDifferentialExpressionMetaAnalysis
All Implemented Interfaces:
Securable, Securable, Describable, Identifiable
@Entity public class GeneDifferentialExpressionMetaAnalysis extends ExpressionAnalysis implements Securable
Represents an analysis that combines the results of other analyses of differential expression.

  • Constructor Details

    • GeneDifferentialExpressionMetaAnalysis

      public GeneDifferentialExpressionMetaAnalysis()

  • Method Details

    • getNumGenesAnalyzed

      public Integer getNumGenesAnalyzed()
      Returns:
      How many genes were included in the meta-analysis. This does not mean that all genes were analyzed in all the experiments.

    • setNumGenesAnalyzed

      public void setNumGenesAnalyzed(Integer numGenesAnalyzed)

    • getQvalueThresholdForStorage

      public Double getQvalueThresholdForStorage()
      Returns:
      The threshold, if any, used to determine which of the metaAnalysis results are persisted to the system.

    • setQvalueThresholdForStorage

      public void setQvalueThresholdForStorage(Double qvalueThresholdForStorage)

    • getResults

      public Set<GeneDifferentialExpressionMetaAnalysisResult> getResults()

    • setResults

      public void setResults(Set<GeneDifferentialExpressionMetaAnalysisResult> results)

    • getResultSetsIncluded

      public Set<ExpressionAnalysisResultSet> getResultSetsIncluded()

    • setResultSetsIncluded

      public void setResultSetsIncluded(Set<ExpressionAnalysisResultSet> resultSetsIncluded)

    • equals

      public boolean equals(Object object)
      Description copied from class: AbstractDescribable
      Important note: The name should be compared in a case-insensitive manner. You can use DescribableUtils.equalsByName(Describable, Describable) to get the correct behavior.

      Important note: Two objects with the same class and non-null ID must be considered equal. If one or both IDs are nulls, the rest of the state can be used to determine equality.

      Specified by:
      equals in class AbstractDescribable