Uses of Class
ubic.gemma.model.analysis.expression.diff.DifferentialExpressionAnalysisValueObject

Packages that use DifferentialExpressionAnalysisValueObject

Package	Description
ubic.gemma.core.tasks.visualization
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.rest

Uses of DifferentialExpressionAnalysisValueObject in ubic.gemma.core.tasks.visualization

Constructors in ubic.gemma.core.tasks.visualization with parameters of type DifferentialExpressionAnalysisValueObject

Modifier	Constructor	Description
	Condition(ExpressionExperimentValueObject experiment, DifferentialExpressionAnalysisValueObject analysis, DiffExResultSetSummaryValueObject resultSet, FactorValueValueObject factorValue)

Uses of DifferentialExpressionAnalysisValueObject in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff that return DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
DifferentialExpressionAnalysisValueObject	DifferentialExpressionAnalysisResultSetValueObject.getAnalysis()

Methods in ubic.gemma.model.analysis.expression.diff with parameters of type DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisResultSetValueObject.setAnalysis(DifferentialExpressionAnalysisValueObject analysis)

Uses of DifferentialExpressionAnalysisValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return types with arguments of type DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
Collection<DifferentialExpressionAnalysisValueObject>	ExpressionExperimentDetailsValueObject.getDifferentialExpressionAnalyses()

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
void	ExpressionExperimentDetailsValueObject.setDifferentialExpressionAnalyses(Collection<DifferentialExpressionAnalysisValueObject> differentialExpressionAnalyses)

Uses of DifferentialExpressionAnalysisValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return types with arguments of type DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
Map<ExpressionExperimentDetailsValueObject,Collection<DifferentialExpressionAnalysisValueObject>>	DifferentialExpressionAnalysisService.findByExperimentIds(Collection<Long> experimentIds, boolean includeSubSets, boolean includeAssays)	Given a set of ids, find experiments or subsets that have differential expression analyses.
Map<ExpressionExperimentDetailsValueObject,Collection<DifferentialExpressionAnalysisValueObject>>	DifferentialExpressionAnalysisServiceImpl.findByExperimentIds(Collection<Long> experimentIds, boolean includeSubSets, boolean includeAssays)

Uses of DifferentialExpressionAnalysisValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type DifferentialExpressionAnalysisValueObject

Modifier and Type	Method	Description
ResponseDataObject<List<DifferentialExpressionAnalysisValueObject>>	DatasetsWebService.getDatasetDifferentialExpressionAnalyses(DatasetArg<?> datasetArg, OffsetArg offsetArg, LimitArg limitArg)	Retrieves the differential analysis results for the given dataset.