Package ubic.gemma.persistence.service

Class AbstractFilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

java.lang.Object

ubic.gemma.persistence.service.AbstractService<O>

ubic.gemma.persistence.service.AbstractFilteringVoEnabledService<O,VO>

All Implemented Interfaces:

BaseImmutableService<O>, BaseReadOnlyService<O>, BaseService<O>, BaseVoEnabledService<O,VO>, FilteringService<O>, FilteringVoEnabledService<O,VO>

Direct Known Subclasses:

ArrayDesignServiceImpl, BioAssayServiceImpl, CharacteristicServiceImpl, CompositeSequenceServiceImpl, DatabaseEntryServiceImpl, ExpressionAnalysisResultSetServiceImpl, ExpressionExperimentServiceImpl, FactorValueServiceImpl, GeneServiceImpl, QuantitationTypeServiceImpl, TaxonServiceImpl

public abstract class AbstractFilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>
extends AbstractService<O>
implements FilteringVoEnabledService<O,VO>, BaseService<O>

Base implementation for FilteringVoEnabledService.

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractFilteringVoEnabledService(FilteringVoEnabledDao<O,VO> voDao)

Method Summary

Modifier and Type	Method	Description
long	count(Filters filters)
<T> Filter	getFilter(String property, Class<T> propertyType, Filter.Operator operator, Collection<T> values)
<T> Filter	getFilter(String property, Class<T> propertyType, Filter.Operator operator, T value)
Filter	getFilter(String property, Filter.Operator operator, String value)
Filter	getFilter(String property, Filter.Operator operator, String value, SubqueryMode subqueryMode)
Filter	getFilter(String property, Filter.Operator operator, Collection<String> values)
Filter	getFilter(String property, Filter.Operator operator, Collection<String> values, SubqueryMode subqueryMode)
Set<String>	getFilterableProperties()
List<Object>	getFilterablePropertyAllowedValues(String property)
Collection<org.springframework.security.access.ConfigAttribute>	getFilterablePropertyConfigAttributes(String property)	Obtain the Spring Security config attributes for a given property.
String	getFilterablePropertyDescription(String property)
List<org.springframework.context.MessageSourceResolvable>	getFilterablePropertyResolvableAllowedValuesLabels(String p)	Obtain a list of resolvable MessageSourceResolvables to be used for user display purposes.
Class<?>	getFilterablePropertyType(String property)
Sort	getSort(String property, Sort.Direction direction, Sort.NullMode nullMode)
boolean	isFilterablePropertyDeprecated(String property)
boolean	isFilterablePropertyUsingSubquery(String property)
List<O>	load(Filters filters, Sort sort)
Slice<O>	load(Filters filters, Sort sort, int offset, int limit)
List<VO>	loadAllValueObjects()	Loads value objects representing all the entities of specific type.
List<Long>	loadIds(Filters filters, Sort sort)
VO	loadValueObject(O entity)
VO	loadValueObjectById(Long entityId)
List<VO>	loadValueObjects(Collection<O> entities)	Loads value objects for all given entities.
List<VO>	loadValueObjects(Filters filters, Sort sort)
Slice<VO>	loadValueObjects(Filters filters, Sort sort, int offset, int limit)
List<VO>	loadValueObjectsByIds(Collection<Long> entityIds)	Load value objects by a given collection of IDs.

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save, update, update

Constructor Details

AbstractFilteringVoEnabledService

protected AbstractFilteringVoEnabledService(FilteringVoEnabledDao<O,VO> voDao)

Method Details

loadIds

@Transactional(readOnly=true)
public List<Long> loadIds(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Specified by:

loadIds in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.loadIds(Filters, Sort)

load

@Transactional(readOnly=true)
public List<O> load(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Specified by:

load in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.load(Filters, Sort)

load

@Transactional(readOnly=true)
public Slice<O> load(@Nullable
 Filters filters,
 @Nullable
 Sort sort,
 int offset,
 int limit)

Specified by:

load in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.load(Filters, Sort, int, int)

loadValueObject

@Transactional(readOnly=true)
public VO loadValueObject(O entity)

Specified by:

loadValueObject in interface BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

See Also:

• BaseVoEnabledDao.loadValueObject(Identifiable)

loadValueObjectById

@Transactional(readOnly=true)
public VO loadValueObjectById(Long entityId)

Specified by:

loadValueObjectById in interface BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

See Also:

• BaseVoEnabledDao.loadValueObjectById(Long)

loadValueObjects

@Transactional(readOnly=true)
public List<VO> loadValueObjects(Collection<O> entities)

Description copied from interface: BaseVoEnabledService

Loads value objects for all given entities.

Specified by:

loadValueObjects in interface BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

Parameters:

entities - the entities to be converted to value objects

Returns:

a collection of value objects representing he given entities.

loadValueObjectsByIds

@Transactional(readOnly=true)
public List<VO> loadValueObjectsByIds(Collection<Long> entityIds)

Description copied from interface: BaseVoEnabledService

Load value objects by a given collection of IDs.

Specified by:

loadValueObjectsByIds in interface BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

loadAllValueObjects

@Transactional(readOnly=true)
public List<VO> loadAllValueObjects()

Description copied from interface: BaseVoEnabledService

Loads value objects representing all the entities of specific type.

Specified by:

loadAllValueObjects in interface BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

Returns:

a collection of value objects

loadValueObjects

@Transactional(readOnly=true)
public Slice<VO> loadValueObjects(@Nullable
 Filters filters,
 @Nullable
 Sort sort,
 int offset,
 int limit)

Specified by:

loadValueObjects in interface FilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

See Also:

• FilteringVoEnabledDao.loadValueObjects(Filters, Sort, int, int)

loadValueObjects

@Transactional(readOnly=true)
public List<VO> loadValueObjects(@Nullable
 Filters filters,
 @Nullable
 Sort sort)

Specified by:

loadValueObjects in interface FilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>

See Also:

• FilteringVoEnabledDao.loadValueObjects(Filters, Sort)

count

@Transactional(readOnly=true)
public long count(@Nullable
 Filters filters)

Specified by:

count in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.count(Filters)

getFilterableProperties

public Set<String> getFilterableProperties()

Specified by:

getFilterableProperties in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilterableProperties()

getFilterablePropertyType

public Class<?> getFilterablePropertyType(String property)

Specified by:

getFilterablePropertyType in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilterablePropertyType(String)

getFilterablePropertyDescription

@Nullable
public String getFilterablePropertyDescription(String property)

Specified by:

getFilterablePropertyDescription in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilterablePropertyDescription(String)

getFilterablePropertyAllowedValues

@Nullable
public List<Object> getFilterablePropertyAllowedValues(String property)

Specified by:

getFilterablePropertyAllowedValues in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilterablePropertyAllowedValues(String)

getFilterablePropertyResolvableAllowedValuesLabels

@Nullable
public List<org.springframework.context.MessageSourceResolvable> getFilterablePropertyResolvableAllowedValuesLabels(String p)

Description copied from interface: FilteringService

Obtain a list of resolvable MessageSourceResolvables to be used for user display purposes.

Nullity and the number of elements is guaranteed to match FilteringService.getFilterablePropertyAllowedValues(String) (String)}, so the two methods can be used jointly.

Specified by:

getFilterablePropertyResolvableAllowedValuesLabels in interface FilteringService<O extends Identifiable>

See Also:

• FilteringService.getFilterablePropertyResolvableAllowedValuesLabels(String)

isFilterablePropertyUsingSubquery

public boolean isFilterablePropertyUsingSubquery(String property)

Specified by:

isFilterablePropertyUsingSubquery in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.isFilterablePropertyUsingSubquery(String)

isFilterablePropertyDeprecated

public boolean isFilterablePropertyDeprecated(String property)

Specified by:

isFilterablePropertyDeprecated in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.isFilterablePropertyDeprecated(String)

getFilterablePropertyConfigAttributes

@Nullable
public Collection<org.springframework.security.access.ConfigAttribute> getFilterablePropertyConfigAttributes(String property)

Description copied from interface: FilteringService

Obtain the Spring Security config attributes for a given property.

Specified by:

getFilterablePropertyConfigAttributes in interface FilteringService<O extends Identifiable>

Returns:

the config attributes, or null if no security check should be performed

getFilter

public Filter getFilter(String property,
 Filter.Operator operator,
 String value)
                 throws IllegalArgumentException

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

Throws:

IllegalArgumentException

See Also:

• FilteringDao.getFilterableProperties()

getFilter

public Filter getFilter(String property,
 Filter.Operator operator,
 String value,
 SubqueryMode subqueryMode)
                 throws IllegalArgumentException

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

Throws:

IllegalArgumentException

getFilter

public Filter getFilter(String property,
 Filter.Operator operator,
 Collection<String> values)
                 throws IllegalArgumentException

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

Throws:

IllegalArgumentException

See Also:

• FilteringDao.getFilter(String, Filter.Operator, Collection)

getFilter

public Filter getFilter(String property,
 Filter.Operator operator,
 Collection<String> values,
 SubqueryMode subqueryMode)
                 throws IllegalArgumentException

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

Throws:

IllegalArgumentException

getFilter

public <T> Filter getFilter(String property,
 Class<T> propertyType,
 Filter.Operator operator,
 T value)

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilter(String, Class, Filter.Operator, Object)

getFilter

public <T> Filter getFilter(String property,
 Class<T> propertyType,
 Filter.Operator operator,
 Collection<T> values)

Specified by:

getFilter in interface FilteringService<O extends Identifiable>

See Also:

• FilteringDao.getFilter(String, Class, Filter.Operator, Collection)

getSort

public Sort getSort(String property,
 @Nullable
 Sort.Direction direction,
 Sort.NullMode nullMode)
             throws IllegalArgumentException

Specified by:

getSort in interface FilteringService<O extends Identifiable>

Throws:

IllegalArgumentException

See Also:

• FilteringDao.getSort(String, Sort.Direction, Sort.NullMode)