Class DatasetsWebService.PcLoadingsValueObject

java.lang.Object

ubic.gemma.rest.DatasetsWebService.PcLoadingsValueObject

Enclosing class:

DatasetsWebService

public static final class DatasetsWebService.PcLoadingsValueObject
extends Object

Wire shape for DatasetsWebService.getDatasetSvdLoadings(DatasetArg, Integer, Integer, DatasetsWebService.PcLoadingDirection): the top-N probe loadings on a principal component plus the bioAssay scores on the same PC.

Author:

tesarst

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	DatasetsWebService.PcLoadingsValueObject.Row

Constructor Summary

Constructors

Constructor	Description
PcLoadingsValueObject(int pc, List<DatasetsWebService.PcLoadingsValueObject.Row> rows, Map<Long,Double> bioAssayScores)	Creates a new PcLoadingsValueObject instance.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
static DatasetsWebService.PcLoadingsValueObject	from(int pc, int top, DatasetsWebService.PcLoadingDirection direction, Map<ProbeLoading, DoubleVectorValueObject> loaded, SVDResult svd, Function<Collection<Long>, Map<Long,Gene>> geneResolver)
Map<Long,Double>	getBioAssayScores()	Map of bioAssay id to the assay's score on this PC.
int	getPc()	1-indexed principal component number this payload is for.
List<DatasetsWebService.PcLoadingsValueObject.Row>	getRows()	Top-N probe loadings, sorted by |loading| desc (direction=both), descending loading (positive), or ascending loading (negative).
int	hashCode()
String	toString()

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

PcLoadingsValueObject

public PcLoadingsValueObject(int pc,
 List<DatasetsWebService.PcLoadingsValueObject.Row> rows,
 Map<Long,Double> bioAssayScores)

Creates a new PcLoadingsValueObject instance.

Parameters:

pc - 1-indexed principal component number this payload is for.

rows - Top-N probe loadings, sorted by |loading| desc (direction=both), descending loading (positive), or ascending loading (negative).

bioAssayScores - Map of bioAssay id to the assay's score on this PC. Pulled from the SVDResult's v-matrix column for the requested PC.

Method Details

from

public static DatasetsWebService.PcLoadingsValueObject from(int pc,
 int top,
 DatasetsWebService.PcLoadingDirection direction,
 Map<ProbeLoading, DoubleVectorValueObject> loaded,
 SVDResult svd,
 Function<Collection<Long>, Map<Long,Gene>> geneResolver)

getPc

public int getPc()

1-indexed principal component number this payload is for.

getRows

public List<DatasetsWebService.PcLoadingsValueObject.Row> getRows()

Top-N probe loadings, sorted by |loading| desc (direction=both), descending loading (positive), or ascending loading (negative).

getBioAssayScores

public Map<Long,Double> getBioAssayScores()

Map of bioAssay id to the assay's score on this PC. Pulled from the SVDResult's v-matrix column for the requested PC.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object